Jatropha Genome Database
- JcCA0012252.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0012252.10 + phase: 2 /partial
(270 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54610.1 | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5... 472 e-133
AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing pro... 64 1e-10
AT5G63320.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 4e-10
AT5G63320.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 4e-10
AT2G34900.1 | Symbols: GTE01, IMB1, GTE1 | IMB1 (IMBIBITION-INDU... 59 2e-09
AT5G63320.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 4e-09
AT2G34900.2 | Symbols: IMB1 | IMB1 (IMBIBITION-INDUCIBLE 1); DNA... 58 6e-09
AT3G27260.1 | Symbols: GTE8 | GTE8; DNA binding | chr3:10068411-... 58 8e-09
AT3G01770.1 | Symbols: ATBET10 | ATBET10 (Arabidopsis thaliana B... 53 2e-07
AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing pro... 53 2e-07
AT1G76380.3 | Symbols: | DNA-binding bromodomain-containing pro... 52 4e-07
AT1G76380.2 | Symbols: | DNA-binding bromodomain-containing pro... 51 6e-07
AT5G14270.1 | Symbols: ATBET9 | ATBET9 (Arabidopsis thaliana Bro... 51 7e-07
AT1G76380.1 | Symbols: | DNA-binding bromodomain-containing pro... 51 7e-07
>AT3G54610.1 | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5;
DNA binding / H3 histone acetyltransferase/ histone
acetyltransferase | chr3:20213593-20217375 FORWARD
Length = 568
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/284 (77%), Positives = 240/284 (84%), Gaps = 14/284 (4%)
Query: 1 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 60
QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYF+KQGFTK
Sbjct: 285 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFVKQGFTK 344
Query: 61 EIYLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVY 120
EIYL+KD W G+IKDYDGG+LMECKIDPKLPYTDLS+MIR+QR+AIDE+IRELSNC VY
Sbjct: 345 EIYLEKDVWHGFIKDYDGGLLMECKIDPKLPYTDLSSMIRQQRKAIDERIRELSNCQNVY 404
Query: 121 PGIDFQKKEVGIPKKIIKVEDIPGLREAGWTPDQWGYSRFNAFNTSTDSATNQKHWTAFM 180
P I+F K E GIP+KIIKVE+I GLREAGWTPDQWG++RF FN S D TNQK A M
Sbjct: 405 PKIEFLKNEAGIPRKIIKVEEIRGLREAGWTPDQWGHTRFKLFNGSADMVTNQKQLNALM 464
Query: 181 RSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVAD 240
R+LLK+M DHADAWPFKEPVD+RDVPDYYDIIKDP+DLK ++KRVESEQYYVT DMFVAD
Sbjct: 465 RALLKTMQDHADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLDMFVAD 524
Query: 241 VKRMFANART--------------LEAHFESKVQSGFQSAAKIQ 270
+RMF N RT LE HF SKVQ+G QS AK Q
Sbjct: 525 ARRMFNNCRTYNSPDTIYYKCATRLETHFHSKVQAGLQSGAKSQ 568
>AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr5:18884439-18886503 REVERSE
Length = 494
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 176 WTAFMRSLLKSMHDHADAWPFKEPVDA--RDVPDYYDIIKDPMDLKTMSKRVESEQYYVT 233
W++ +LL+ + +H W FKEPVD ++PDY+++I+ PMDL T+ ++ + Y
Sbjct: 69 WSSQCLALLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQKPMDLGTVKSKL-LKNVYSN 127
Query: 234 FDMFVADVKRMFANA 248
D F ADV+ FANA
Sbjct: 128 ADEFAADVRLTFANA 142
>AT5G63320.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487);
BEST Arabidopsis thaliana protein match is: ATBET9
(Arabidopsis thaliana Bromodomain and Extraterminal
Domain protein 9); DNA binding (TAIR:AT5G14270.1). |
chr5:25377180-25378783 REVERSE
Length = 477
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 153 DQWGYSRFNAFNTSTDSATNQKHWTAFMRSLLKSMHDHADAWPFKEPVDA--RDVPDYYD 210
++ G SR N + T ++ ++ T LL + H WPF+ PVD ++PDY++
Sbjct: 143 NKKGPSRLNVPTSYTVASVMKECET-----LLNRLWSHKSGWPFRTPVDPVMLNIPDYFN 197
Query: 211 IIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
+IK PMDL T+ R+ +Y D F ADV+ F+N+
Sbjct: 198 VIKHPMDLGTIRSRLCKGEYSSPLD-FAADVRLTFSNS 234
>AT5G63320.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487);
BEST Arabidopsis thaliana protein match is: ATBET9
(Arabidopsis thaliana Bromodomain and Extraterminal
Domain protein 9); DNA binding (TAIR:AT5G14270.1). |
chr5:25377180-25378783 REVERSE
Length = 477
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 153 DQWGYSRFNAFNTSTDSATNQKHWTAFMRSLLKSMHDHADAWPFKEPVDA--RDVPDYYD 210
++ G SR N + T ++ ++ T LL + H WPF+ PVD ++PDY++
Sbjct: 143 NKKGPSRLNVPTSYTVASVMKECET-----LLNRLWSHKSGWPFRTPVDPVMLNIPDYFN 197
Query: 211 IIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
+IK PMDL T+ R+ +Y D F ADV+ F+N+
Sbjct: 198 VIKHPMDLGTIRSRLCKGEYSSPLD-FAADVRLTFSNS 234
>AT2G34900.1 | Symbols: GTE01, IMB1, GTE1 | IMB1
(IMBIBITION-INDUCIBLE 1); DNA binding |
chr2:14723333-14725562 REVERSE
Length = 386
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 164 NTSTDSATNQKHWTA--FMR---SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPM 216
N++ + KH ++ MR ++ + + H AWPF EPVD + + DYY +I+ PM
Sbjct: 93 NSAGKEKSKGKHVSSPDLMRQFATMFRQIAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPM 152
Query: 217 DLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
DL T+ K++ES +Y +++ ADV+ +F NA
Sbjct: 153 DLGTIKKKMESSEYSNVREIY-ADVRLVFKNA 183
>AT5G63320.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487);
BEST Arabidopsis thaliana protein match is: ATBET9
(Arabidopsis thaliana Bromodomain and Extraterminal
Domain protein 9); DNA binding (TAIR:AT5G14270.1); Has
44558 Blast hits to 24285 proteins in 1236 species:
Archae - 185; Bacteria - 3450; Metazoa - 19774; Fungi -
4003; Plants - 1404; Viruses - 349; Other Eukaryotes -
15393 (source: NCBI BLink). | chr5:25374413-25378783
REVERSE
Length = 1061
Score = 58.5 bits (140), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 156 GYSRFNAFNTSTDSATNQKHWTAFMRSLLKSMHDHADAWPFKEPVDA--RDVPDYYDIIK 213
G SR N + T ++ ++ +LL + H WPF+ PVD ++PDY+++IK
Sbjct: 146 GPSRLNVPTSYTVASVMKE-----CETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIK 200
Query: 214 DPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
PMDL T+ R+ +Y D F ADV+ F+N+
Sbjct: 201 HPMDLGTIRSRLCKGEYSSPLD-FAADVRLTFSNS 234
>AT2G34900.2 | Symbols: IMB1 | IMB1 (IMBIBITION-INDUCIBLE 1); DNA
binding | chr2:14723333-14724800 REVERSE
Length = 276
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 182 SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
++ + + H AWPF EPVD + + DYY +I+ PMDL T+ K++ES +Y +++ A
Sbjct: 6 TMFRQIAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIY-A 64
Query: 240 DVKRMFANA 248
DV+ +F NA
Sbjct: 65 DVRLVFKNA 73
>AT3G27260.1 | Symbols: GTE8 | GTE8; DNA binding |
chr3:10068411-10072403 FORWARD
Length = 813
Score = 57.8 bits (138), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 145 LREAGWTPDQWGYSRFNAFNTSTDSATNQKHWTAFMR--SLLKSMHDHADAWPFKEPVDA 202
+R T W F +S ++ T+ + T + +LL+ + H +W F+ PVD
Sbjct: 143 VRHQNGTSRGWNRGTSGKFESSKETMTSTPNITLMKQCDTLLRKLWSHPHSWVFQAPVDV 202
Query: 203 --RDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANART 250
++PDY IK PMDL T+ K + S Y + F ADV+ F NA T
Sbjct: 203 VKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHE-FAADVRLTFTNAMT 251
>AT3G01770.1 | Symbols: ATBET10 | ATBET10 (Arabidopsis thaliana
BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA
binding | chr3:275582-278386 REVERSE
Length = 620
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 182 SLLKSMHDHADAWPFKEPVDA--RDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
SLLK + W F PVD ++PDY+ IIK PMDL T+ ++ S Y + F A
Sbjct: 135 SLLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYSSPSE-FSA 193
Query: 240 DVKRMFANART 250
DV+ F NA T
Sbjct: 194 DVRLTFRNAMT 204
>AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:6125532-6127276 REVERSE
Length = 487
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 182 SLLKSMHDHADAWPFKEPVDARDVP--DYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
SLL + H AW F PVDA+ + DY++I+K+PMDL T+ ++ Y D F
Sbjct: 138 SLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPLD-FAE 196
Query: 240 DVKRMFANA 248
DV+ F NA
Sbjct: 197 DVRLTFNNA 205
>AT1G76380.3 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:28651416-28654536 REVERSE
Length = 579
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
+ +P D ++PDYY+IIK+PMD T+ K++ES Y T + F A+V + NA
Sbjct: 165 YSDPADPEELPDYYEIIKNPMDFTTLRKKLES-GAYTTLEQFEANVFLICTNA 216
>AT1G76380.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:28651416-28654536 REVERSE
Length = 580
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
+ +P D ++PDYY+IIK+PMD T+ K++ES Y T + F DV + NA
Sbjct: 166 YSDPADPEELPDYYEIIKNPMDFTTLRKKLES-GAYTTLEQFEQDVFLICTNA 217
>AT5G14270.1 | Symbols: ATBET9 | ATBET9 (Arabidopsis thaliana
Bromodomain and Extraterminal Domain protein 9); DNA
binding | chr5:4605173-4608517 FORWARD
Length = 688
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 182 SLLKSMHDHADAWPFKEPVDA--RDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVA 239
+LLK + H W F PVD ++ DY+++I+ PMDL T+ ++ S Y + F A
Sbjct: 143 ALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSE-FAA 201
Query: 240 DVKRMFANART 250
DV+ F+NA T
Sbjct: 202 DVRLTFSNAMT 212
>AT1G76380.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:28651416-28654536 REVERSE
Length = 579
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 196 FKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFDMFVADVKRMFANA 248
+ +P D ++PDYY+IIK+PMD T+ K++ES Y T + F DV + NA
Sbjct: 165 YSDPADPEELPDYYEIIKNPMDFTTLRKKLES-GAYTTLEQFEQDVFLICTNA 216