Jatropha Genome Database

JcCA0012121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.10 + phase: 0 /pseudo/partial
         (736 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DN...   890   0.0  
AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780)...   151   1e-36
AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA REC...    94   4e-19

>AT5G67100.1 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DNA
            polymerase | chr5:26776994-26785104 FORWARD
          Length = 1492

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/708 (62%), Positives = 526/708 (74%), Gaps = 37/708 (5%)

Query: 28   SFQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKETKMTKRRINHGGEERNAEELXXXXX 87
            + QGARAQR+EY LLH FH+KK+I+PDK S  +KE K +KRR+++  E+RN +EL     
Sbjct: 821  TLQGARAQRIEYYLLHTFHSKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDELDADLT 880

Query: 88   XXXXXXXXXXRXXXXXXPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV 147
                             PAYAGGLVLEPK+GLYDKYVLLLDFNSLYPSIIQEYNICFTT+
Sbjct: 881  LENDPSKGSK---TKKGPAYAGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTI 937

Query: 148  EKSTDGLVPRLPSGKKTGVLPELLKNLVERRRMVKSWMKNASGLKIQQLDIQQQALKLTA 207
             +S DG VPRLPS +  G+LP+L+++LV  R+ VK  MK  +GLK  +LDI+QQALKLTA
Sbjct: 938  PRSEDG-VPRLPSSQTPGILPKLMEHLVSIRKSVKLKMKKETGLKYWELDIRQQALKLTA 996

Query: 208  NSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGL 267
            NSMYGCLGFSNSRFYAKPLAELITLQGR+ILQ TVDLVQN+LNLEVIYGDTDSIMI+SGL
Sbjct: 997  NSMYGCLGFSNSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGL 1056

Query: 268  DDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGTPYEVIE 327
            DDI + KAI  KVIQEVNKKYRCL+ID DG                  QFKDG P E IE
Sbjct: 1057 DDIEEVKAIKSKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKLQFKDGKPCEDIE 1116

Query: 328  RKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQVELEKY 387
            RKG+DMVRRDWSLLSKE+GD CL++IL GGSCEDVVE+IHN LMK++E+MRNGQV LEKY
Sbjct: 1117 RKGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKY 1176

Query: 388  VITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQ-EASSGSMT 446
            VITK+LTKPP AYPD+K+QPHV VALR++Q GY  G +A DTVPYIIC EQ  ASS S  
Sbjct: 1177 VITKTLTKPPAAYPDSKSQPHVQVALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSA 1236

Query: 447  GIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSK 506
            GIA+RARHPDE+K +  +W++DIDYYL+QQIHPVVSRLCA IQGTSPERLA+CLGLD SK
Sbjct: 1237 GIAERARHPDEVKSEGSRWLVDIDYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDPSK 1296

Query: 507  FKNKXXXXXXXXXXXXLLFAVNDEERYRSCEPLILSCPSCSNTFECPAIFSSIGLIIGEK 566
            +++K            LLFA +DEE                                 +K
Sbjct: 1297 YRSKSNDATSSDPSTSLLFATSDEE--------------------------------SKK 1324

Query: 567  PIKPRVKESMSNFWRTMRCPRCPEEGDMGIISSAIIANQVKRQVEGFLSVYYKGLMMCDD 626
            P  P  +ES S FW  + CP+C +E   GIIS A+IANQVKRQ++GF+S+YYKG+M+C+D
Sbjct: 1325 PATPETEESDSTFWLKLHCPKCQQEDSTGIISPAMIANQVKRQIDGFVSMYYKGIMVCED 1384

Query: 627  ETCKYTTRSLNLRLVGDAEKGTVCANYPRCNGRLVRKYKEADLYKQLSYFCYLLDTVYCI 686
            E+CK+TTRS N RL+G+ E+GTVC NYP CNG L+RKY EADLYKQLSYFC++LDT   +
Sbjct: 1385 ESCKHTTRSPNFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHILDTQCSL 1444

Query: 687  EKMDANTRIPLEKELSKIRPIVDLALSTVKKIRDRCAYGWVQLNDLAV 734
            EKMD   RI +EK ++KIRP V  A +  +  RDRCAYGW+QL D+ +
Sbjct: 1445 EKMDVGVRIQVEKAMTKIRPAVKSAAAITRSSRDRCAYGWMQLTDIVI 1492


>AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780);
           DNA binding / DNA-directed DNA polymerase/ nucleic acid
           binding / nucleotide binding | chr5:25599597-25606672
           FORWARD
          Length = 1095

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 194/407 (47%), Gaps = 46/407 (11%)

Query: 106 AYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTD----GLVP----R 157
            Y G  VLE + G Y+K +  LDF SLYPSI+  YN+C+ T+    D     L P    +
Sbjct: 578 TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHVTK 637

Query: 158 LPSGK-------KTGVLPELLKNLVERRRMVKSWMKNASG-LKIQQLDIQQQALKLTANS 209
            PSG+       + G+LPE+L+ L+  R+  K+ +K A   L+   LD +Q ALK++ANS
Sbjct: 638 TPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANS 697

Query: 210 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 261
           +YG  G +  +     ++  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 698 VYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSV 757

Query: 262 MIYSGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGT 321
           M+  G+ D+  A  +  +  + ++  +    I L+                    + +  
Sbjct: 758 MVQFGVSDVEAAMTLGREAAEHISGTF-IKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQ 816

Query: 322 PYEVIERKGLDMVRRDWSLLSKELGDFCLAQIL----SGGSCEDVVESIHNSLMKVQEDM 377
            ++ ++ KG++ VRRD  LL K L    L +IL      G+ E+V ++I + LM      
Sbjct: 817 QFDKMDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLM------ 870

Query: 378 RNGQVELEKYVITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSE 437
              +++L   VITK LTK  + Y       H  +A R+++    T  + GD VPY+I   
Sbjct: 871 --NRIDLSLLVITKGLTKTGDDY--EVKSAHGELAERMRKRDAATAPNVGDRVPYVIIK- 925

Query: 438 QEASSGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRL 484
                 +  G     R  D +        ID +YYL  QI   + R+
Sbjct: 926 ------AAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLLRI 966


>AT1G67500.1 | Symbols: ATREV3 | ATREV3 (ARABIDOPSIS THALIANA RECOVERY
            PROTEIN 3); DNA binding / DNA-directed DNA polymerase |
            chr1:25287707-25296714 REVERSE
          Length = 1890

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 181/417 (43%), Gaps = 59/417 (14%)

Query: 111  LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT-------VEKSTDGL--------- 154
            LV+EP+   YD  V++LDF SLYPS+I  YN+CF+T       ++ +T G+         
Sbjct: 1342 LVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFSTCLGKLAHLKMNTLGVSSYSLDLDV 1401

Query: 155  -------------VPRLPSGKKTGVLPELLKNLVERRRMVKSWMKN---ASGLKIQQLDI 198
                         V  +P   + G+LP LL+ ++  R MVK  MK    +  +  +  + 
Sbjct: 1402 LQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNA 1461

Query: 199  QQQALKLTANSMYG--CLGFSNSRFYAKPLAELITLQGREILQSTVDLV--QNNLNLEVI 254
            +Q ALKL AN  YG    GFS  R     LA+ I   GR  L+  +  V   +N N  V+
Sbjct: 1462 RQLALKLIANVTYGYTAAGFSG-RMPCAELADSIVQCGRSTLEKAISFVNANDNWNARVV 1520

Query: 255  YGDTDSIMIYSGLDDITKAKAIAGKV---IQEVNKKYRCLEIDLDGXXXXXXXXXXXXXX 311
            YGDTDS+ +      + +A  +  ++   I E+N     L+++                 
Sbjct: 1521 YGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPHPVTLKME------KVYHPCFLLTK 1574

Query: 312  XXXXQFKDGTPYE---VIERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHN 368
                 +   +P +   + + KG++ VRRD    + E     + Q L     +  +  + +
Sbjct: 1575 KRYVGYSYESPNQREPIFDAKGIETVRRD----TCEAVAKTMEQSLRLFFEQKNISKVKS 1630

Query: 369  SLMKVQEDMRNGQVELEKYVITKSLTKPPEAYPDAK-NQPHVLVALRLKQMGYTTGCSAG 427
             L +  + + +G+V L+ ++  K +     +  D+    P  +VA +  +    T     
Sbjct: 1631 YLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVATKSMKADPRTEPRYA 1690

Query: 428  DTVPYIICSEQEASSGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRL 484
            + VPY++   +  +      +      P  L   D  + ++  YY+++QI P + R+
Sbjct: 1691 ERVPYVVIHGEPGAR-----LVDMVVDPLVLLDVDTPYRLNDLYYINKQIIPALQRV 1742