Jatropha Genome Database

JcCA0012011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012011.20 + phase: 0 /TE/partial
         (1424 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    95   4e-19
AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...    84   8e-16

>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
            chrM:228573-229085 REVERSE
          Length = 170

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 6/121 (4%)

Query: 1046 MMTRAQY------KRYFGNVAFASQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLI 1099
            M+TR++        +Y   +    + EPK++  A  D     AMQEEL+    N+ W L+
Sbjct: 1    MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 1100 SRPKNHSVIGTKWVFRNKLDEQGNVVRNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRM 1159
              P N +++G KWVF+ KL   G + R K RLVA+G++QEEGI+F ET++PV R   IR 
Sbjct: 61   PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 1160 L 1160
            +
Sbjct: 121  I 121


>AT4G23160.1 | Symbols:  | protein kinase family protein |
            chr4:12129485-12134086 FORWARD
          Length = 1262

 Score = 84.0 bits (206), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%)

Query: 1059 VAFASQIEPKNLEDAQNDESSILAMQEELNQFEINQVWKLISRPKNHSVIGTKWVFRNKL 1118
            V  A   EP    +A+       AM +E+   E    W++ + P N   IG KWV++ K 
Sbjct: 78   VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 1119 DEQGNVVRNKTRLVAQGYNQEEGIHFDETFAPVARLVAIRMLCAFECFH 1167
            +  G + R K RLVA+GY Q+EGI F ETF+PV +L +++++ A    +
Sbjct: 138  NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIY 186