Jatropha Genome Database

JcCA0011081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0011081.10 - phase: 0 
         (214 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35490.1 | Symbols:  | plastid-lipid associated protein PAP, ...   118   3e-27
AT4G04020.1 | Symbols: FIB | FIB (FIBRILLIN); structural molecul...    65   5e-11
AT4G22240.1 | Symbols:  | plastid-lipid associated protein PAP, ...    64   6e-11

>AT2G35490.1 | Symbols:  | plastid-lipid associated protein PAP,
           putative | chr2:14912309-14913797 REVERSE
          Length = 376

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 76/121 (62%), Gaps = 14/121 (11%)

Query: 99  ITDEWGEKIEPNTESDYPKYADADPPVRDDEWEEEY-----AAAGNGSTSQSTGVVVEKD 153
           ITDEWGEK  P  E    ++ ++DPP  +DEW  E      A AGNGS            
Sbjct: 97  ITDEWGEKSGPELEESGTRFMESDPPRNEDEWGGEIGGETEADAGNGSAVS--------- 147

Query: 154 DNVGDLKRILVDTVYGTNFGFQASPEIRAEVLELVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           D   +LKR L D+VYGT  GF+A  E+RAEVLELVNQLEA+NPT  P++  E+LDGNWVL
Sbjct: 148 DPTWELKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVL 207

Query: 214 L 214
           L
Sbjct: 208 L 208


>AT4G04020.1 | Symbols: FIB | FIB (FIBRILLIN); structural molecule |
           chr4:1932161-1933546 FORWARD
          Length = 318

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 127 DDEWEEEYA--AAGNGSTSQSTGVVVEKDDNVGDLKRILVDTVYGTNFGFQASPEIRAEV 184
           DDEW ++       + ST       +E  +    LKR L D++YGT+ G   S + RAE+
Sbjct: 60  DDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEI 119

Query: 185 LELVNQLEAMNPTQTPVDAAEVLDGNWVL 213
            EL+ QLE+ NPT  P +A  +L+G W+L
Sbjct: 120 SELITQLESKNPTPAPNEALFLLNGKWIL 148


>AT4G22240.1 | Symbols:  | plastid-lipid associated protein PAP,
           putative | chr4:11766090-11767227 REVERSE
          Length = 310

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%)

Query: 159 LKRILVDTVYGTNFGFQASPEIRAEVLELVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           LKR LVD++YGT+ G  AS E RAE+ +L+ QLE+ NPT  P +A  +L+G W+L
Sbjct: 86  LKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWIL 140