Jatropha Genome Database

JcCA0009632.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009632.10 + phase: 2 /partial
         (132 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09240.1 | Symbols: NAS3, ATNAS3 | NAS3 (NICOTIANAMINE SYNTHA...   134   2e-32
AT1G56430.1 | Symbols: ATNAS4, NAS4 | NAS4 (NICOTIANAMINE SYNTHA...   131   1e-31
AT5G56080.1 | Symbols: ATNAS2, NAS2 | NAS2 (NICOTIANAMINE SYNTHA...   125   5e-30
AT5G04950.1 | Symbols: NAS1, ATNAS1 | NAS1 (NICOTIANAMINE SYNTHA...   123   4e-29
AT4G26480.1 | Symbols:  | KH domain-containing protein | chr4:13...    53   4e-08

>AT1G09240.1 | Symbols: NAS3, ATNAS3 | NAS3 (NICOTIANAMINE SYNTHASE
           3); nicotianamine synthase | chr1:2984950-2985912
           FORWARD
          Length = 320

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 98/133 (73%), Gaps = 12/133 (9%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           VFLAALVGM+KEEKV+V++HL K+MA GA+L+LRSA+G RAFLYP+V+PCDLQGFEVLS+
Sbjct: 199 VFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPIVEPCDLQGFEVLSI 258

Query: 61  FHPTDEVINSVIIARKLDYGYNDHQIKPLHDLQQQGLVSNLILPTKCSEIEAFNPLNHGN 120
           +HPTD+VINSV+I++K       H +  + ++   G  S L+ P  CS+  A   +N   
Sbjct: 259 YHPTDDVINSVVISKK-------HPVVSIGNV--GGPNSCLLKPCNCSKTHA--KMNKNM 307

Query: 121 MVEELTI-EEKLS 132
           M+EE    EE+LS
Sbjct: 308 MIEEFGAREEQLS 320


>AT1G56430.1 | Symbols: ATNAS4, NAS4 | NAS4 (NICOTIANAMINE SYNTHASE
           4); nicotianamine synthase | chr1:21137023-21137997
           FORWARD
          Length = 324

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 89/117 (76%), Gaps = 5/117 (4%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           VFLAALVGMDK+EKV+V++HL K+M+ GA+L+LRSA+G RAFLYP+V+PCDL+GFEVLSV
Sbjct: 200 VFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVEPCDLEGFEVLSV 259

Query: 61  FHPTDEVINSVIIARKLDYGYN----DHQIKPLHDLQQQGLVSNLILPTKCSEIEAF 113
           +HPTDEVINS++I+RKL    N    DH I    DL       ++I+  K S IE F
Sbjct: 260 YHPTDEVINSIVISRKLGEDANGVVHDH-IDQASDLACNCSKIHVIMNKKKSIIEEF 315


>AT5G56080.1 | Symbols: ATNAS2, NAS2 | NAS2 (NICOTIANAMINE SYNTHASE
           2); nicotianamine synthase | chr5:22711402-22712364
           REVERSE
          Length = 320

 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 92/131 (70%), Gaps = 16/131 (12%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           VFLAALVGMDKE KV+ ++HL K+MA GA+++LRSA+G RAFLYP+VD CDL+GFEVL++
Sbjct: 199 VFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFLYPIVDSCDLKGFEVLTI 258

Query: 61  FHPTDEVINSVIIARKL--DYGYNDHQIKPLHDLQQQGLVSNLILPTKCSEIEAFNPLNH 118
           +HP+D+V+NSV+IARKL    G    QI              +++P  CS++ A   LN+
Sbjct: 259 YHPSDDVVNSVVIARKLGGSNGARGSQIGRC-----------VVMPCNCSKVHAI--LNN 305

Query: 119 GNMVEELTIEE 129
             M + L IEE
Sbjct: 306 RGMEKNL-IEE 315


>AT5G04950.1 | Symbols: NAS1, ATNAS1 | NAS1 (NICOTIANAMINE SYNTHASE
           1); nicotianamine synthase | chr5:1457876-1458838
           REVERSE
          Length = 320

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 88/130 (67%), Gaps = 10/130 (7%)

Query: 1   VFLAALVGMDKEEKVRVLDHLAKNMARGAMLLLRSANGARAFLYPVVDPCDLQGFEVLSV 60
           VFLAALVGMDKE KV+ ++HL K+MA GA+L+LRSA+  RAFLYP+VD  DL+GF++L++
Sbjct: 200 VFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYPIVDSSDLKGFQLLTI 259

Query: 61  FHPTDEVINSVIIARKLDYGYNDHQIKPLHDLQQQGLVSNLILPTKCSEIEA-FNPLNHG 119
           +HPTD+V+NSV+IARKL  G     +         G    + +P  CS+I A  N     
Sbjct: 260 YHPTDDVVNSVVIARKLG-GPTTPGV--------NGTRGCMFMPCNCSKIHAIMNNRGKK 310

Query: 120 NMVEELTIEE 129
           NM+EE +  E
Sbjct: 311 NMIEEFSAIE 320


>AT4G26480.1 | Symbols:  | KH domain-containing protein |
           chr4:13372885-13378390 REVERSE
          Length = 555

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 4/48 (8%)

Query: 34  RSANGARAFLY-PV-VDPCDLQGFEVLSVFHP--TDEVINSVIIARKL 77
           R + G R+  Y PV VDPCDL+GFEVL ++HP  +D  +NSV++ARKL
Sbjct: 147 RGSGGRRSDDYFPVDVDPCDLKGFEVLEIYHPSMSDGFVNSVMVARKL 194