Jatropha Genome Database

JcCA0009561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009561.20 - phase: 0 /TE/partial
         (1128 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   240   3e-63
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    97   9e-20
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    69   2e-11
ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    51   4e-06

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 186/309 (60%), Gaps = 13/309 (4%)

Query: 630 WIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRDSQGNVERYKARLVAKGFTQ 689
           W  AM++E  +M+    W++  LP  KKPIGCKW++K K +S G +ERYKARLVAKG+TQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 690 KEGIDYKETFSPVSSKDSFRTIMALVANLDLELHQMDVKTAFLNGDIDETIFMVQPENFV 749
           +EGID+ ETFSPV    S + I+A+ A  +  LHQ+D+  AFLNGD+DE I+M  P  + 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 750 I--GD--PKHLVCKLKKSIYGLKQASRQWYFKFNQVIVSFGFEANTVENCVYHKFSGSRF 805
              GD  P + VC LKKSIYGLKQASRQW+ KF+  ++ FGF  +  ++  + K + + F
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 806 IFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDRSRDILGLSQ 865
           + +++YVDDI++ +N    + E K  L   F+++DLG   + LG++I R  +   + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQ 335

Query: 866 KSYIDKVLKRFSMQNSRPLDTPIAKGDKFSNQQCPKSELEIQEMQKVPYASAVGSLMYVQ 925
           + Y   +L    +   +P   P+     FS      S  +  + +   Y   +G LMY+Q
Sbjct: 336 RKYALDLLDETGLLGCKPSSVPMDPSVTFSAH----SGGDFVDAKA--YRRLIGRLMYLQ 389

Query: 926 VCTRPDISL 934
           + TR DIS 
Sbjct: 390 I-TRLDISF 397


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 611 IDDDPVSFYHAMQSSDSHKWIEAMNEEYKSMQDNQVWDLVQLPEGKKPIGCKWIFKTKRD 670
           I  +P S   A++      W +AM EE  ++  N+ W LV  P  +  +GCKW+FKTK  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 80

Query: 671 SQGNVERYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRTIMALVANLDL 720
           S G ++R KARLVAKGF Q+EGI + ET+SPV    + RTI+ +   L++
Sbjct: 81  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 14/130 (10%)

Query: 806 IFLVLYVDDILLATNCKVLLHETKVFLSKHFEMKDLGEASFVLGIQIHRDRSRDILGLSQ 865
           ++L+LYVDDILL  +   LL+     LS  F MKDLG   + LGIQI    S   L LSQ
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 58

Query: 866 KSYIDKVLKRFSMQNSRPLDTPIA--KGDKFSNQQCPKSELEIQEMQKVPYASAVGSLMY 923
             Y +++L    M + +P+ TP+        S  + P             + S VG+L Y
Sbjct: 59  TKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPS---------DFRSIVGALQY 109

Query: 924 VQVCTRPDIS 933
           + + TRPDIS
Sbjct: 110 LTL-TRPDIS 118


>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
           chrM:207553-207915 REVERSE
          Length = 120

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 394 NRTLMDMVRSMISHSTLPESLWGEALKTAAYLLNRIPSKAVA-KTPYELWTGRKPSLKHL 452
           NRT+++ VRSM+    LP++   +A  TA +++N+ PS A+    P E+W    P+  +L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 453 HVWGCPA 459
             +GC A
Sbjct: 62  RRFGCVA 68