Jatropha Genome Database
- JcCA0009532.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0009532.10 - phase: 0
(429 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | HB-3; transcription fa... 209 2e-54
AT5G45980.1 | Symbols: WOX8, STPL | WOX8 (WUSCHEL RELATED HOMEOB... 175 5e-44
AT3G03660.2 | Symbols: WOX11 | WOX11 (WUSCHEL related homeobox 1... 96 5e-20
AT3G03660.1 | Symbols: WOX11 | WOX11 (WUSCHEL related homeobox 1... 96 5e-20
AT5G17810.1 | Symbols: WOX12 | WOX12 (WUSCHEL related homeobox 1... 95 7e-20
AT3G18010.1 | Symbols: WOX1 | WOX1 (WUSCHEL related homeobox 1);... 78 1e-14
AT5G05770.1 | Symbols: WOX7 | WOX7 (WUSCHEL-RELATED HOMEOBOX 7);... 74 2e-13
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | PRS (PRESSED FLOWER); t... 74 2e-13
AT3G11260.1 | Symbols: WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5);... 73 4e-13
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WOX14 (WUSCHEL RELATED H... 71 2e-12
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WOX13 (WUSCHEL-REL... 70 2e-12
AT1G46480.1 | Symbols: WOX4 | WOX4 (WUSCHEL RELATED HOMEOBOX 4);... 70 3e-12
AT5G59340.1 | Symbols: WOX2 | WOX2 (WUSCHEL RELATED HOMEOBOX 2);... 69 4e-12
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA bind... 69 7e-12
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | PFS2 (PRETTY FEW SEEDS... 68 1e-11
AT5G46010.1 | Symbols: | homeobox-leucine zipper transcription ... 66 3e-11
AT1G20710.1 | Symbols: WOX10 | WOX10 (WUSCHEL related homeobox 1... 56 5e-08
>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | HB-3; transcription
factor | chr2:14341639-14343597 REVERSE
Length = 378
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/125 (83%), Positives = 109/125 (87%), Gaps = 6/125 (4%)
Query: 1 MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVSSGCHKSPYTSVPGCE-ERSPEPKPR 59
MASSNRHWPSMFKSKP H HQWQH+INS L S+ SP++S GCE ERSPEPKPR
Sbjct: 1 MASSNRHWPSMFKSKP---HPHQWQHDINSPLLPSASHRSSPFSS--GCEVERSPEPKPR 55
Query: 60 WNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 119
WNPKPEQIRILEAIFNSGMVNPPR+EIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL
Sbjct: 56 WNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 115
Query: 120 RHLQN 124
R L N
Sbjct: 116 RLLHN 120
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 9/84 (10%)
Query: 289 VTVPSTVNQIQGVGESSPAGSSVAARSTVFINDVAIEVGVGPFNLREAFGDDFLLIHSSG 348
TVPST +Q+Q + AR VFIN++ +EV GPFN+R+AFG++ +LI+S+G
Sbjct: 304 ATVPSTSDQLQVQAD---------ARIRVFINEMELEVSSGPFNVRDAFGEEVVLINSAG 354
Query: 349 QPVLTNEWGLTLHSLQHGASYYLV 372
QP++T+E+G+ LH LQHGASYYL+
Sbjct: 355 QPIVTDEYGVALHPLQHGASYYLI 378
>AT5G45980.1 | Symbols: WOX8, STPL | WOX8 (WUSCHEL RELATED HOMEOBOX
8); DNA binding / transcription factor |
chr5:18648921-18650698 FORWARD
Length = 325
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 108/136 (79%), Gaps = 6/136 (4%)
Query: 1 MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVS-SGCHKSPYTSVPGCEERSPEPKPR 59
M+SSN++WPSMFKSKPC ++HH QHEI++ S + S C+ S S +R P+PKPR
Sbjct: 1 MSSSNKNWPSMFKSKPCNNNHHH-QHEIDTPSYMHYSNCNLSSSFS----SDRIPDPKPR 55
Query: 60 WNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 119
WNPKPEQIRILE+IFNSG +NPPR+EI+RIR +LQEYGQ+GDANVFYWFQNRKSR+KHKL
Sbjct: 56 WNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHKL 115
Query: 120 RHLQNSKQQTYQNPSV 135
R S + + ++ +V
Sbjct: 116 RVHHKSPKMSKKDKTV 131
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 6/90 (6%)
Query: 289 VTVPSTVNQIQ-----GVGESSPAGSSV-AARSTVFINDVAIEVGVGPFNLREAFGDDFL 342
+TVP T+NQ Q G+ G +V R TVFIN++ IEV G FN++ AFG+D +
Sbjct: 236 LTVPLTINQSQEKRDVGLSGGEDVGDNVYPVRMTVFINEMPIEVVSGLFNVKAAFGNDAV 295
Query: 343 LIHSSGQPVLTNEWGLTLHSLQHGASYYLV 372
LI+S GQP+LT+E+G+T LQ+GA YYL+
Sbjct: 296 LINSFGQPILTDEFGVTYQPLQNGAIYYLI 325
>AT3G03660.2 | Symbols: WOX11 | WOX11 (WUSCHEL related homeobox 11);
DNA binding / transcription factor | chr3:889515-892162
REVERSE
Length = 297
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 40 KSPYTSVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQV 99
+SP +S G P + RW+PKPEQI ILE+IF+SGMVNPP++E RIR L+++G V
Sbjct: 15 RSPPSSASGSTSAEPV-RSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAV 73
Query: 100 GDANVFYWFQN 110
GDANVFYWFQN
Sbjct: 74 GDANVFYWFQN 84
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 316 TVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLVP 373
TVFIN V EV G +++ FG+D +L+HSSG P+ T+E+G +HSLQHG +Y+LVP
Sbjct: 237 TVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLVP 294
>AT3G03660.1 | Symbols: WOX11 | WOX11 (WUSCHEL related homeobox 11);
DNA binding / transcription factor | chr3:889515-892162
REVERSE
Length = 268
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 40 KSPYTSVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQV 99
+SP +S G P + RW+PKPEQI ILE+IF+SGMVNPP++E RIR L+++G V
Sbjct: 15 RSPPSSASGSTSAEP-VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAV 73
Query: 100 GDANVFYWFQN 110
GDANVFYWFQN
Sbjct: 74 GDANVFYWFQN 84
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 316 TVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLVP 373
TVFIN V EV G +++ FG+D +L+HSSG P+ T+E+G +HSLQHG +Y+LVP
Sbjct: 208 TVFINGVPTEVTRGGIDMKATFGEDLVLVHSSGVPLPTDEFGFLMHSLQHGEAYFLVP 265
>AT5G17810.1 | Symbols: WOX12 | WOX12 (WUSCHEL related homeobox 12);
DNA binding / transcription factor |
chr5:5880576-5882602 REVERSE
Length = 268
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Query: 53 SPEP-KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 110
S EP + RW+PKPEQI ILE+IFNSG VNPP+DE RIR L+++G VGDANVFYWFQN
Sbjct: 14 STEPVRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 316 TVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLVP 373
TVFIN V +EV G +++ FGDD +L+HSSG P+ T+E+G +HSLQHG +Y+LVP
Sbjct: 208 TVFINGVPMEVTKGAIDMKTMFGDDSVLLHSSGLPLPTDEFGFLMHSLQHGQTYFLVP 265
>AT3G18010.1 | Symbols: WOX1 | WOX1 (WUSCHEL related homeobox 1);
transcription factor | chr3:6161155-6163183 REVERSE
Length = 350
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP P+Q+R+LE ++ G P D I++I AQL+ YG++ NVFYWFQN K+R + K
Sbjct: 76 RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135
Query: 119 LR 120
R
Sbjct: 136 RR 137
>AT5G05770.1 | Symbols: WOX7 | WOX7 (WUSCHEL-RELATED HOMEOBOX 7);
DNA binding / transcription factor |
chr5:1734487-1734855 FORWARD
Length = 122
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP EQ+++L +F +G+ P D+I++I +L YG++ NVFYWFQN K+R + K
Sbjct: 29 RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88
Query: 119 LRHLQNSK 126
R + K
Sbjct: 89 CRKISTVK 96
>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | PRS (PRESSED FLOWER);
transcription factor | chr2:12262115-12263286 FORWARD
Length = 244
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 53 SPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 112
SP RW P PEQ+ ILE ++ SG+ P +I++I A L YG++ NVFYWFQN K
Sbjct: 2 SPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHK 61
Query: 113 SRSKHKLR 120
+R + KLR
Sbjct: 62 ARDRQKLR 69
>AT3G11260.1 | Symbols: WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5);
transcription factor | chr3:3527606-3528263 FORWARD
Length = 182
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP EQ++IL +F +G+ P D+I++I +L YG++ NVFYWFQN K+R + K
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83
Query: 119 LRHLQNSKQQTYQNPSV 135
R + + PS
Sbjct: 84 RRKISIDFDHHHHQPST 100
>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WOX14 (WUSCHEL RELATED
HOMEOBOX 14); DNA binding / transcription factor |
chr1:7182558-7183866 FORWARD
Length = 211
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 57 KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 116
+ RW P Q++ILE+I++ G P R IR I +L E+GQ+ + NV+ WFQNR++RSK
Sbjct: 93 RHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSK 152
Query: 117 HK 118
K
Sbjct: 153 RK 154
>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WOX13
(WUSCHEL-RELATED HOMEOBOX 13); DNA binding /
transcription factor | chr4:16875814-16877167 REVERSE
Length = 268
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 36 SGCHKSPYTSVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQE 95
G + P S G + + + RW P P Q++ILE IF+ G P + +I+ I +L +
Sbjct: 79 GGLYADPMMSSLGHKMTA---RQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQ 135
Query: 96 YGQVGDANVFYWFQNRKSRSKHK 118
+GQ+ + NV+ WFQNR++RSK K
Sbjct: 136 HGQIAEQNVYNWFQNRRARSKRK 158
>AT1G46480.1 | Symbols: WOX4 | WOX4 (WUSCHEL RELATED HOMEOBOX 4);
transcription factor | chr1:17236903-17237953 REVERSE
Length = 251
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP EQI ILE ++ GM P +I I QL +YG++ NVFYWFQN K+R + K
Sbjct: 90 RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149
>AT5G59340.1 | Symbols: WOX2 | WOX2 (WUSCHEL RELATED HOMEOBOX 2);
transcription factor | chr5:23933408-23934627 REVERSE
Length = 260
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
RWNP +QI +LE ++ G+ P D+I++I +L+ YG + NVFYWFQN K+R + K
Sbjct: 14 RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQK 73
Query: 119 LRH 121
+
Sbjct: 74 QKQ 76
>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding
/ protein binding / transcription factor/ transcription
regulator | chr2:7809100-7810671 REVERSE
Length = 292
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 59 RWNPKPEQIRIL-EAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 117
RW P EQI+IL E +N+ + +P D+I++I A+L+++G++ NVFYWFQN K+R +
Sbjct: 38 RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQ 97
Query: 118 KLR 120
K R
Sbjct: 98 KKR 100
>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | PFS2 (PRETTY FEW SEEDS
2); transcription factor | chr2:224470-225997 REVERSE
Length = 271
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 59 RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKS 113
RWNP PEQI LE ++ SG P ++I++I ++L++YG++ NVFYWFQN K+
Sbjct: 61 RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115
>AT5G46010.1 | Symbols: | homeobox-leucine zipper transcription
factor family protein | chr5:18660584-18661183 FORWARD
Length = 122
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 55 EPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYG-QVGDANVFYWFQNRKS 113
+PKP W P Q +ILE +F G VNP I++I +LQ YG +V DA+V+ WF NRK
Sbjct: 50 DPKPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKWFHNRKY 109
Query: 114 RSKHKL 119
K KL
Sbjct: 110 SRKPKL 115
>AT1G20710.1 | Symbols: WOX10 | WOX10 (WUSCHEL related homeobox 10);
DNA binding / transcription factor |
chr1:7184485-7185267 FORWARD
Length = 197
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 66 QIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
Q++ILE I+ G P I+ I +L E+GQ+ + NV++WFQNR++RSK K
Sbjct: 86 QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRK 138