Jatropha Genome Database

JcCA0008021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.30 - phase: 0 
         (157 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45640.1 | Symbols: SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED P...   174   3e-44

>AT2G45640.1 | Symbols: SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED
           POLYPEPTIDE P18); protein binding / transcription
           regulator | chr2:18799881-18801323 REVERSE
          Length = 152

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 99/124 (79%), Gaps = 2/124 (1%)

Query: 35  PGLEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVK 94
           P  EP+DREKTCPLLLRVFTK G HH  ED+AV GKEPKDEVQIYTWKDA+L ELTDLVK
Sbjct: 28  PKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVK 87

Query: 95  EVVPEARRQSARLSFAFVYPDIHGRFMLRVVGVT--HSNARRPYDAKALGELSFQIGDYL 152
           EV   ARR++ARLSFAFVYP+  G + +R VG T  + N ++P D+K L EL F+IGDYL
Sbjct: 88  EVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYL 147

Query: 153 DVAI 156
           DVAI
Sbjct: 148 DVAI 151