Jatropha Genome Database

JcCA0007981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0007981.20 - phase: 0 
         (287 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26840.1 | Symbols: ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION C...   349   9e-97

>AT1G26840.1 | Symbols: ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION
           COMPLEX PROTEIN 6); DNA binding | chr1:9298822-9300603
           FORWARD
          Length = 284

 Score =  349 bits (896), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 177/285 (62%), Positives = 211/285 (74%), Gaps = 4/285 (1%)

Query: 1   MDLSEIAKKLGLSESKNLIRKAAELRRLCDVQFDSSIIGVGEVSKAIICLEIAATRFQVI 60
           MD+S+I +KL L  +K LIRKAAE+RRLCD QFDSSIIGVGE+ KA+ICLEIAATR Q+I
Sbjct: 1   MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATRLQII 60

Query: 61  FDRQAAIRLSGLSEKAYTRSFNSLQNSLGVKTKLDIRELGIQFGCIRLIPLVKKGLSLYK 120
           FDRQAA++LSG+SEKAY+RSFNSLQN +G+K KL++REL +QFGC+R+I  V+  LS YK
Sbjct: 61  FDRQAAVKLSGMSEKAYSRSFNSLQNVIGIKIKLNVRELAVQFGCVRVIKSVQNVLSSYK 120

Query: 121 ERFLASLPATRRASADFTRPVFTAVAFYLCAXXXXXXXXXXXXXEVCGTSESEFKSVSTS 180
           ERFLASLPA+RRA+ADFTRPVFTA AFYLCA             EVCGTSESEF  VSTS
Sbjct: 121 ERFLASLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGTSESEFSCVSTS 180

Query: 181 MNDLCYDVFGISKEKKDPREVKGNRELLDVLPEKRKFEDGGYLSDDGAELSSYKKRKTAE 240
           M DLC+D  GISKEKKD ++VKGNR+LLDVLP KR+ EDGGY S  G E S YK+ K  E
Sbjct: 181 MTDLCFDCVGISKEKKDAKDVKGNRDLLDVLPGKRRLEDGGYSS--GDESSCYKRHKKME 238

Query: 241 KVAYQEWXXXXXXXXXXXXXXGPCKQTRQTRLNFFKEVPETAGLE 285
           +  Y++W              G  K+  Q  LNF K+  ET  L+
Sbjct: 239 EAKYEDWKSTVVNSIKKNPEKGT-KRVIQASLNFPKK-SETKELQ 281