Jatropha Genome Database

JcCA0006671.80
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.80 + phase: 0 
         (134 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33870.1 | Symbols:  | peroxidase, putative | chr4:16234670-1...    47   5e-06

>AT4G33870.1 | Symbols:  | peroxidase, putative |
           chr4:16234670-16236492 REVERSE
          Length = 358

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 74  LEYDFYRDSCPQXXXXXXXXXXXXCKTQSNVAPALLRLAFHDCFIE 119
           L YD+YR+SCP                  +VAP ++RL FHDCFIE
Sbjct: 68  LHYDYYRESCPTAEKIIAKAIRDIYNVTPSVAPPIIRLLFHDCFIE 113