Jatropha Genome Database

JcCA0006671.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.40 - phase: 0 
         (206 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52330.2 | Symbols:  | unknown protein | chr1:19488962-194896...   160   4e-40
AT1G52330.1 | Symbols:  | unknown protein | chr1:19488962-194897...   159   1e-39
AT4G13270.1 | Symbols:  | unknown protein | chr4:7731280-7732902...   140   7e-34

>AT1G52330.2 | Symbols:  | unknown protein | chr1:19488962-19489645
           FORWARD
          Length = 227

 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 116/181 (64%), Gaps = 8/181 (4%)

Query: 21  YTPIPCQ--HDQNYIVLPFHHHPTTFRGPSKP-MIITIICLLFIPALVYLLWPSDPNLRI 77
           Y P+P    H+ N  VL    HP+    PS+   II+I  + F   L+Y+ WPSDP ++I
Sbjct: 16  YKPLPSSSSHELNDAVL-ISSHPSP---PSRRRFIISIFLISFASILIYIFWPSDPRIKI 71

Query: 78  VRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYSMDLRRLDVALAYRGKRLGHVKVKGK 137
           +R+ ++ +H+H  P+ +ID++L VT+KV N DVYS D   LDV + YRGK LGHV   G 
Sbjct: 72  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDG- 130

Query: 138 GHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAKGRVPFDTVIKVSGELGFLGLEFPFK 197
           GHV+A GSSY+D E E  GV +  DV+ L+ DLAKG V FDTV + +G+LG L   FP K
Sbjct: 131 GHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 190

Query: 198 V 198
           V
Sbjct: 191 V 191


>AT1G52330.1 | Symbols:  | unknown protein | chr1:19488962-19489763
           FORWARD
          Length = 214

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 8/181 (4%)

Query: 21  YTPIPCQ--HDQNYIVLPFHHHPTTFRGPSKP-MIITIICLLFIPALVYLLWPSDPNLRI 77
           Y P+P    H+ N  VL    HP+    PS+   II+I  + F   L+Y+ WPSDP ++I
Sbjct: 16  YKPLPSSSSHELNDAVL-ISSHPSP---PSRRRFIISIFLISFASILIYIFWPSDPRIKI 71

Query: 78  VRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYSMDLRRLDVALAYRGKRLGHVKVKGK 137
           +R+ ++ +H+H  P+ +ID++L VT+KV N DVYS D   LDV + YRGK LGHV   G 
Sbjct: 72  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDG- 130

Query: 138 GHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAKGRVPFDTVIKVSGELGFLGLEFPFK 197
           GHV+A GSSY+D E E  GV +  DV+ L+ DLAKG V FDTV + +G+LG L   FP K
Sbjct: 131 GHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 190

Query: 198 V 198
            
Sbjct: 191 A 191


>AT4G13270.1 | Symbols:  | unknown protein | chr4:7731280-7732902
           FORWARD
          Length = 215

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 113/181 (62%), Gaps = 6/181 (3%)

Query: 21  YTPIPCQHDQNYIVL--PFHHH--PTTFRGPSKPMIITIICLLFIPALVYLLWPSDPNLR 76
           YTP+P       ++L  P+  H  P+  R     ++ T + LL + A VYLL+PSDP++ 
Sbjct: 13  YTPLPSSQPSQSVILLTPYRRHRRPSLLRNLRCSLLFTAVILL-LSAAVYLLYPSDPDIT 71

Query: 77  IVRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYSMDLRRLDVALAYRGKRLGHVKVKG 136
           + R++LN I +     I +D+S  +TIKVRN D +S+D   L V++ YRG+ LG VK KG
Sbjct: 72  VSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVSIGYRGRELGLVKSKG 131

Query: 137 KGHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAKGRVPFDTVIKVSGELGFLGLEFPF 196
            GH+ A  SSY+D  LE  G+ ++ DV++L+ DLAKG +PFDT+ +V G+LG L    P 
Sbjct: 132 -GHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVLLFNIPI 190

Query: 197 K 197
           +
Sbjct: 191 Q 191