Jatropha Genome Database

JcCA0006661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006661.10 + phase: 2 /TE/partial
         (1311 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...    84   6e-16
ATMG00750.1 | Symbols: ORF119 | hypothetical protein | chrM:2208...    74   5e-13

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 606 LTNLTKVLKRCIESNLVLNYEKCHFMVDQGLILGH--IVSSRGIEVDKAKIDVIKSLPYP 663
           + +L  VL+   +     N +KC F   Q   LGH  I+S  G+  D AK++ +   P P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 664 ASVREIRSFLGHAGFYRRFIKDFSKIAQPLCKLLQKDVPFVFNGECREAFDMLKEKLISA 723
            +  E+R FLG  G+YRRF+K++ KI +PL +LL+K+    +      AF  LK  + + 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 119

Query: 724 PIVQPPNWNYPFEIMCDASNYA 745
           P++  P+   PF       N++
Sbjct: 120 PVLALPDLKLPFVTRVGKWNWS 141


>ATMG00750.1 | Symbols: ORF119 | hypothetical protein |
            chrM:220830-221189 FORWARD
          Length = 119

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 961  RKILECGLFWPSMFKDSYIYCKSCENCQKTGNLSRRDQMPLTSILICEIFDVWGIDFM 1018
            R +L+ G +WP+ FKD++ +  SC+ CQ+ GN ++R++MP   IL  E+FDVWGI FM
Sbjct: 33   RFVLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90