Jatropha Genome Database

JcCA0006582.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006582.10 + phase: 0 /partial
         (593 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   445   e-125

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
            protein | chr4:9805652-9814910 REVERSE
          Length = 1850

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/610 (44%), Positives = 356/610 (58%), Gaps = 49/610 (8%)

Query: 1    VLGPFIEGLNDPVHHKRFCLY----------------QYTRHLNVRKGIDFLHSLALIAK 44
            VLGPFIEGLNDP HHK F L                  YT  LN R  + FL +LA +AK
Sbjct: 531  VLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAK 590

Query: 45   HQSFGRAGLMGLAECIASAASGVGIQDDNEVEWSEDASPNAVQLKSSSNKIHHXXXXXXX 104
             QSF RAG M L +CI S A  VG   D E+   ED      Q +SS   +         
Sbjct: 591  KQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKFSGTAQ-ESSCGHLSQDDMTHIL 649

Query: 105  XXXRFVIESSKQHFNPNYRLR---------------------VCEKVLEAVASVVSTFNV 143
               +FV ESS+QHFN  YR+R                     V +KVLE  ASVV+  NV
Sbjct: 650  DVLKFVAESSRQHFNHKYRIRASLTILNTLKFLLLIVLFHFLVYQKVLETAASVVNPCNV 709

Query: 144  PLEVLLHFVSTLPREFTDYGGSLREKMQEWLFGGDKFYSSNNNSNQIKLLKSLQEFPERF 203
            PL  LL FVS +PREFTD+ G LR+ M EWL G ++  S++  ++  +LL SL E+ + F
Sbjct: 710  PLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLKGF 769

Query: 204  TSSQVFVDTFVSFDDEDLDAWESEAKRWARMLFLVIKGEDQLGPIFTFIRKYGVNICEEF 263
            TS     D   SFDDEDL+AW+S+ KRWAR+ FL+I  E+ L  I  F++  G++  +E 
Sbjct: 770  TS-----DNVESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQEK 824

Query: 264  NRVGCSPVKFFVITINLVAEIQLMQEKALDNGIRIRNKPKVSLFETVDQLDCAEASIING 323
            N +  +P KF +  ++++ E+Q MQ+   +    +++K  +   E   +    +AS I  
Sbjct: 825  NHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSIKK 884

Query: 324  KXXXXXXXXXXXXVNFACASCSIFLT-STARDTSLPSSVRGKLGGPSQRRLSSSTTTAVL 382
            K            + FA +SCSIF + +T  + +LP SV GKLGGPSQRRLS  TTTAVL
Sbjct: 885  KFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTAVL 944

Query: 383  EAITSIRAVASIMSWCAQFTSDV-HLKFAWTFMWQFFWKTVSSPTCGSENGAEICLAAYE 441
            EA+ S++ +  I S+CAQFTS V  LK A  F W+F   T+SS  C SE  AEI LAA+E
Sbjct: 945  EAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAAFE 1004

Query: 442  ALVPVLRSIASTFSPRAMDLIMENDKSSTS-AEGSCLDQL-VLSFLQNINNLLAVGVLVR 499
            AL  VL +  S  S  A +L +END +  S  +G    Q+ V +F++NIN+LL  GVLVR
Sbjct: 1005 ALASVLNAFVSLCSAGAFNL-LENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLVR 1063

Query: 500  TRRAVLLNWKWLCLESLLSIPQTAVENGIHLEDNRSFFSDAVIRYIFSDLVESLENSGES 559
            +RRAVLL+WKWLC+ESLLS+        I  ED +SFFSD  ++ IF D+VESLEN+GE 
Sbjct: 1064 SRRAVLLSWKWLCVESLLSVMHILDARRIP-EDRKSFFSDDTVKSIFQDIVESLENAGEG 1122

Query: 560  SVLPMLRSIR 569
            S LPML+S+R
Sbjct: 1123 SALPMLKSVR 1132