Jatropha Genome Database

JcCA0004811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0004811.20 + phase: 0 /TE
         (1379 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   161   3e-39
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...    85   4e-16

>AT4G23160.1 | Symbols:  | protein kinase family protein |
            chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 107/162 (66%), Gaps = 7/162 (4%)

Query: 856  KDPISFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSK 915
            K+P ++ +A E      W  AM +E+ +M     W++  LP   K +GCKWV+K K +S 
Sbjct: 84   KEPSTYNEAKEF---LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140

Query: 916  GKIEKYKARVVAKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFL 975
            G IE+YKAR+VAK YTQ++GID+ ETFSPV K  S+ +ILA+ A Y+  LHQ+D+   FL
Sbjct: 141  GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200

Query: 976  NGDLEEEVYMDQPEGFVVTGKENL----VCKFKKSIYGLKQA 1013
            NGDL+EE+YM  P G+     ++L    VC  KKSIYGLKQA
Sbjct: 201  NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQA 242


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 3/111 (2%)

Query: 853 SIDKDPISFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKX 912
           +I K+P S   A++      W  AM+EE+ ++S N+ W LV  P     +GCKWVFKTK 
Sbjct: 23  TIKKEPKSVIFALK---DPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKL 79

Query: 913 DSKGKIEKYKARVVAKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDL 963
            S G +++ KAR+VAK + Q++GI + ET+SPV +  ++  IL +    ++
Sbjct: 80  HSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130