Jatropha Genome Database
- JcCA0004811.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0004811.10 + phase: 2 /partial
(910 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30800.1 | Symbols: HVT1, ATVT-1 | HVT1 (HELICASE IN VASCULAR... 1019 0.0
AT1G06670.1 | Symbols: NIH | NIH (NUCLEAR DEIH-BOXHELICASE); DNA... 944 0.0
AT2G35920.1 | Symbols: | helicase domain-containing protein | c... 343 4e-94
AT2G01130.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 295 1e-79
AT1G58060.1 | Symbols: | helicase domain-containing protein | c... 290 3e-78
AT1G48650.1 | Symbols: | helicase domain-containing protein | c... 281 1e-75
AT1G48650.2 | Symbols: | helicase domain-containing protein | c... 281 2e-75
AT5G04895.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 278 2e-74
AT1G58050.1 | Symbols: | helicase domain-containing protein | c... 275 8e-74
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 178 2e-44
AT2G35340.1 | Symbols: MEE29 | MEE29 (maternal effect embryo arr... 166 5e-41
AT1G32490.1 | Symbols: EMB2733, ESP3 | ESP3 (ENHANCED SILENCING ... 161 2e-39
AT5G13010.1 | Symbols: EMB3011 | EMB3011 (embryo defective 3011)... 159 6e-39
AT1G26370.1 | Symbols: | RNA helicase, putative | chr1:9122030-... 159 6e-39
AT1G27900.1 | Symbols: | RNA helicase, putative | chr1:9715615-... 158 1e-38
AT4G18465.1 | Symbols: | RNA helicase, putative | chr4:10197056... 156 8e-38
AT3G62310.1 | Symbols: | RNA helicase, putative | chr3:23057516... 155 8e-38
AT4G16680.1 | Symbols: | RNA helicase, putative | chr4:9388071-... 155 9e-38
AT2G47250.1 | Symbols: | RNA helicase, putative | chr2:19399923... 152 1e-36
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 128 1e-29
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 124 3e-28
AT1G33390.1 | Symbols: | helicase domain-containing protein | c... 123 6e-28
AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase famil... 86 1e-16
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-conta... 54 3e-07
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | HVT1 (HELICASE IN VASCULAR
TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid
binding | chr2:13120585-13126635 REVERSE
Length = 1299
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/899 (59%), Positives = 647/899 (71%), Gaps = 64/899 (7%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPVISFSRWSLTIYLISACKL 60
D+LPS+PHLRLILMSATLDA RFS YFGGCP++RVPGFTYPV
Sbjct: 331 DLLPSNPHLRLILMSATLDAERFSGYFGGCPVVRVPGFTYPV------------------ 372
Query: 61 IYFCIVQVKTFYLEDVLSIIKSPDDNHIDSAMPGVPNKSPELTEEDKAALDEAINLAWTN 120
+T YLEDVLSI+KS DNH+ S + + +LT+EDK ALDEAI LAWTN
Sbjct: 373 --------RTLYLEDVLSILKSGGDNHLSSTNLSISDHKLDLTDEDKLALDEAIILAWTN 424
Query: 121 DEFDPLLDLVSSETNPNVYNYLDSLLGLTPLMVFAGKGRVVDVCMLLSFGVNCHLQDKDG 180
DEFD LLDLVSS + +YNY LTPLMVFAGKGR+ DVCMLLSFG + L+ KDG
Sbjct: 425 DEFDALLDLVSSRGSHEIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSFGADWSLKSKDG 484
Query: 181 LTAMDWAKQENQQETAEVIKRHVESALTDSLKQQQLLDKYLEKINPELIDVVLIEQLLRK 240
+TA++ A+ ENQ E A++I+ H +++ ++S + QQLLDKY+ INPE +DV LI+QL+RK
Sbjct: 485 MTALELAEAENQLEAAQIIREHADNSQSNSQQGQQLLDKYMATINPEQVDVSLIQQLMRK 544
Query: 241 ICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKRP 300
IC DS+DGAIL+FLPGWD INKTR+RLL NPFF DS+KF II LHSMVP EQKKVF RP
Sbjct: 545 ICGDSEDGAILVFLPGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNRP 604
Query: 301 PQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQRE 360
P GCRKI+L+TNIAESA+TIDDVVYVIDSGRMKEKSYDPY NVSTL S+WVSKA+A+QR+
Sbjct: 605 PPGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQRQ 664
Query: 361 GRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKTL 420
GRAGRCQPGICYHLYS+LRAAS+PDF+VPEIKRMP+EELCLQVK+LDPN K DFL+K L
Sbjct: 665 GRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFLQKLL 724
Query: 421 DPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPAL 480
DPPV ++I NA+++LQDIGAL+ E+LTELGEK G LPVHPL SKMLFFA+L+NCLDPAL
Sbjct: 725 DPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCLDPAL 784
Query: 481 TLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQE 540
TLACA+DY++PFT+P+ P E+++A AAK E+ASL GG SD LAV+AAFECWKNAK RG
Sbjct: 785 TLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKGRGLS 844
Query: 541 LQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGLY 600
+FCSQYF+SP M MLD MR QL++EL R+G I + +S C+ N+ D GIL +VL GLY
Sbjct: 845 AEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLAVGLY 904
Query: 601 PMVGRFLPP-KNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEITRGDG 659
PMVGR P N +R +ETA GAKVR+H S N+N L+ KK D+ L+V+DEITRGDG
Sbjct: 905 PMVGRLCPAFGNNRRTIVETA-SGAKVRVHSLSNNFN-LSSKKYDES-LLVFDEITRGDG 961
Query: 660 GMHIRNCTIVGPLPLLLLATEIVVAPSKNXXXXXXXXXXXXXXXXXXXXSDEDLMEVDE- 718
GMHIRNCT+ LPLLL++TEI VAP+ + ++E +E
Sbjct: 962 GMHIRNCTVARDLPLLLISTEIAVAPTGSSDSDDSNEEEEDDEEVAANTNEEVAANTNEE 1021
Query: 719 -----KSGGHNDKKIMSSPDNSVTTVVDRWLYFRSTALDVAQIYCLRERLSAAILFKVTH 773
K K+MSSP+NSV VVDRWL FR+TAL+VAQ+Y LRERL A+ILFKVTH
Sbjct: 1022 GMDIHKEESRRGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVTH 1081
Query: 774 PRKTLPPALEASMYAIASVLSYDGLSGIPLPLESV---DSLTSMVYATGIDNSPGRREAM 830
PR+ LPP L ASM+AIA +LSYDG +G+ P ES+ S T M Y TG
Sbjct: 1082 PREHLPPHLGASMHAIAGILSYDGHAGLSCPPESMVPKHSRTEM-YDTG---------GW 1131
Query: 831 NQGPSNFLKSLM-----------SHGARQPAPGYHIAKLPAFKGKSNGNESSSYDQRPP 878
+ P++FL SL SH R Y++A A N Y QR P
Sbjct: 1132 EEKPNSFLNSLFWSLSLKENKHPSHTNRNQQHNYNMAPTEAASIPRQQN----YKQRNP 1186
>AT1G06670.1 | Symbols: NIH | NIH (NUCLEAR DEIH-BOXHELICASE); DNA
binding / DNA helicase | chr1:2040567-2047333 FORWARD
Length = 1576
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/819 (57%), Positives = 605/819 (73%), Gaps = 42/819 (5%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPVISFSRWSLTIYLISACKL 60
D+LPS+PHLRLILMSATLDA RFS+YFGGCP++RVPGFTYPV
Sbjct: 361 DLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTYPV------------------ 402
Query: 61 IYFCIVQVKTFYLEDVLSIIKSPDDNHIDSAMPGVPNKSPELTEEDKAALDEAINLAWTN 120
+TF+L+D LS++ S ++H+ SA+ + +EDK +LDEAI+LAWTN
Sbjct: 403 --------RTFFLDDALSVLNSDKNSHLLSAV------KRDFKDEDKVSLDEAIDLAWTN 448
Query: 121 DEFDPLLDLVSSETNPNVYNYLDSLLGLTPLMVFAGKGRVVDVCMLLSFGVNCHLQDKDG 180
DEFD L+DLVSSE + YNY +S GLTPLMVFAGKGRV DVC LLS G +C L+ K+G
Sbjct: 449 DEFDCLVDLVSSEGSHEAYNYQNSTTGLTPLMVFAGKGRVSDVCKLLSVGADCTLKSKEG 508
Query: 181 LTAMDWAKQENQQETAEVIKRHVESALTDSLKQQQLLDKYLEKINPELIDVVLIEQLLRK 240
+TA++ A++ENQ ETA++I+ H + ++S + Q LLDKY+ I PE +DV LI +L++K
Sbjct: 509 ITALELAEKENQFETAQIIREHAGNIQSNSQQAQDLLDKYMATIKPEEVDVGLIVKLMKK 568
Query: 241 ICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKRP 300
IC DSKDGAIL+FLPGW+ I+KT+E+LL + FF S+KF+I+ LHS VP EQKKVF RP
Sbjct: 569 ICSDSKDGAILVFLPGWEEISKTKEKLLDDRFFAHSAKFIILCLHSRVPAEEQKKVFNRP 628
Query: 301 PQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQRE 360
P+GCRKI+L+TNIAESA+TIDDVVYVIDSGRMKEKSYDPY +VSTL S+WVSKA+A+QR
Sbjct: 629 PRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQSSWVSKANAKQRA 688
Query: 361 GRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKTL 420
GRAGRCQ GICYHLYSKLRAASLP+++VPE+ RMP++ELCLQVK+LDPN + DFL+K +
Sbjct: 689 GRAGRCQAGICYHLYSKLRAASLPEYRVPEVMRMPVDELCLQVKMLDPNCNVNDFLQKLM 748
Query: 421 DPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPAL 480
DPPV ++I NA+ +L+DIGAL+ +E+LTELG+K G LPVHP SKM++FAIL+NCLDPAL
Sbjct: 749 DPPVAQSIENALIILKDIGALTPEEELTELGQKFGQLPVHPRISKMIYFAILVNCLDPAL 808
Query: 481 TLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQE 540
LACA+D +DPFT+P+ P ++K+A AAK E+ASLYG +SD LA +AAF+CWKNAKA GQ
Sbjct: 809 ILACAADEKDPFTMPLSPGDRKKAAAAKHELASLYGDHSDHLATVAAFQCWKNAKASGQA 868
Query: 541 LQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGLY 600
+FCS+YFIS +M LD + ++LQ EL R+G I S C+LNAHD GIL +V+ GLY
Sbjct: 869 KEFCSKYFISQVVMKRLDDLCRKLQGELNRHGVIPSSSSNCSLNAHDPGILRAVIAVGLY 928
Query: 601 PMVGRFLP-PKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEITRGDG 659
PM+GR P KN R IET + GAKVR+ P N ++ K D+ LIV+DEITRGD
Sbjct: 929 PMLGRMCPLSKNRTRSVIET-IAGAKVRV-PSLSNNVDMSSTKFDEA-LIVFDEITRGDW 985
Query: 660 GMHIRNCTIVGPLPLLLLATEIVVAPSKNXXXXXXXXXXXXXXXXXXXXSDEDLMEVDEK 719
G+ IR+CT++ +P+LL + EI V+ +++ D M++D K
Sbjct: 986 GVVIRSCTVLPTIPVLLFSREIAVSTTESYDAVKSDDEEDHKVGNVG-----DAMDID-K 1039
Query: 720 SGGHNDKKIMSSPDNSVTTVVDRWLYFRSTALDVAQIYCLRERLSAAILFKVTHPRKTLP 779
G +KIM P+NSV VVDRWL F+ TA ++AQ+Y LRERL A+ILFKV HP++ LP
Sbjct: 1040 EVGRPGEKIMLGPENSVKVVVDRWLPFKVTAFEIAQMYILRERLMASILFKVKHPKENLP 1099
Query: 780 PALEASMYAIASVLSYDGLSGIPLPLESVDSLTSMVYAT 818
P L ASMYAIASVLSYD L+ + +V +TS+V AT
Sbjct: 1100 PHLGASMYAIASVLSYDSLAQSSVQTVAVQPITSVVDAT 1138
>AT2G35920.1 | Symbols: | helicase domain-containing protein |
chr2:15075674-15080506 FORWARD
Length = 995
Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 201/468 (42%), Positives = 275/468 (58%), Gaps = 16/468 (3%)
Query: 221 LEKINPELIDVVLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFV 280
LE + IDV L+E + IC GAIL+FL GWD I+K E++ N F DSSKF+
Sbjct: 477 LEAWSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKINMNNFLGDSSKFL 536
Query: 281 IISLHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPY 340
++ LH +PT+ Q+++F RPP RKI+L+TNIAES+ITIDDVVYV+D G+ KE SYD
Sbjct: 537 VLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 596
Query: 341 QNVSTLHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELC 400
V+ L +W+SKASA QR GRAGR Q G+CY LY K+ + P +Q+PEI R P++ELC
Sbjct: 597 NKVACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQELC 656
Query: 401 LQVKLLDPNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVH 460
L +K L I FL K L PP + NAI +L+ IGAL+ E+LT LG L LPV
Sbjct: 657 LHIKSLQVG-SIGSFLAKALQPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVD 715
Query: 461 PLTSKMLFFAILMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSD 520
P KML + C++PALT+A A YR PF LP+ N K+ A AK A SD
Sbjct: 716 PNIGKMLLIGAIFQCVNPALTIAAALAYRSPFVLPL--NRKEEADEAKRYFAG--DSCSD 771
Query: 521 QLAVIAAFECWKNAKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGV-S 579
+A++ A+E +++AK G E FC Q F+SP + M++ MR Q L GF++ +
Sbjct: 772 HIALLKAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPN 831
Query: 580 CCNLNAHDQGILHSVLVAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLT 639
N ++D ++ +VL AGLYP V + + GKR T G KV +HP S+N
Sbjct: 832 AYNQYSYDMEMISAVLCAGLYPNVVQC--KRRGKRTAFYTKELG-KVDIHPGSVNARVNL 888
Query: 640 FKKADDCPLIVYDEITRGDGGMHIRNCTIVGPLPLLLLATEIVVAPSK 687
F P +VY E + ++IR+ T + LL+ ++ PSK
Sbjct: 889 F----SLPYLVYSEKVK-TTSVYIRDSTNISDYALLMFGGNLI--PSK 929
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV 42
D+LP P LRLILMSAT++A FS YFG P + +PGFT+PV
Sbjct: 370 DLLPRRPDLRLILMSATINADMFSTYFGNSPTMHIPGFTFPV 411
>AT2G01130.1 | Symbols: | ATP binding / ATP-dependent helicase/ RNA
binding / double-stranded RNA binding / helicase/
nucleic acid binding | chr2:88847-94635 REVERSE
Length = 1113
Score = 295 bits (754), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/456 (37%), Positives = 253/456 (55%), Gaps = 14/456 (3%)
Query: 226 PELIDVVLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLH 285
P+ I LIE LL IC + G ILIFL GWD I+ +E+L +P F + ++++ H
Sbjct: 477 PDCIGFNLIEFLLCNICENEGPGGILIFLTGWDDISSLKEKLQIHPIFGNPDLVMLLACH 536
Query: 286 SMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVST 345
+ T EQ+ +F+ P G RKI+L+TNIAE++ITI+DV +VID G+ KE SYD N
Sbjct: 537 GSMETFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPC 596
Query: 346 LHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKL 405
L +W+SK SA+QR GRAGR +PG CYHLY K + ++Q+PEI R P+ LCLQ+K
Sbjct: 597 LLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKS 656
Query: 406 LDPNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSK 465
L+ I +FL + L P + AI L+ IGAL +E LT LG L LP+ P K
Sbjct: 657 LNLG-SISEFLSRALQSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGK 715
Query: 466 MLFFAILMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVI 525
ML ++ CLDP LT+A RDPF P ++K A AAK + + +SD LA++
Sbjct: 716 MLILGAILGCLDPILTVAAGLSVRDPFLTP--QDKKDLAEAAKSQFSR---DHSDHLALV 770
Query: 526 AAFECWKNAKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNA 585
A+E WK A+ +C + F+S + +D +RK+ + L G I+ S CN
Sbjct: 771 RAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEG 830
Query: 586 HDQGILHSVLVAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADD 645
+D + +V+ G+YP + + N + F ++T G +V L+ +S N +
Sbjct: 831 NDANLTRAVICYGMYPGICSVV--HNERSFSLKTMEDG-QVLLYSNSENARETKIP---- 883
Query: 646 CPLIVYDEITRGDGGMHIRNCTIVGPLPLLLLATEI 681
P +V++E + + + +R+ T L+L I
Sbjct: 884 YPWLVFNEKIKVN-SVFLRDSTACSDSTLILFGGSI 918
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV--------ISFSRWSLTI 52
D+L L+LILMSATLDA FS YFGG +I +PGFTYPV + +R+ LT
Sbjct: 362 DLLSRRSELKLILMSATLDAELFSSYFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRLTP 421
Query: 53 Y 53
Y
Sbjct: 422 Y 422
>AT1G58060.1 | Symbols: | helicase domain-containing protein |
chr1:21489480-21501775 REVERSE
Length = 1459
Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 182/509 (35%), Positives = 274/509 (53%), Gaps = 54/509 (10%)
Query: 221 LEKINPELIDVVLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFV 280
L+++N + ID L+E+L+ I ++GAILIFLPG I + L A+ F+ +
Sbjct: 889 LKRLNEDRIDYELLEELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADW 948
Query: 281 IISLHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPY 340
++ LHS + + EQ+KVF RPP+G RK+I +TNIAE++ITIDDVVYVIDSG+ KE Y+P
Sbjct: 949 LLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQ 1008
Query: 341 QNVSTLHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASLPD-FQVPEIKRMPIEEL 399
+ +S++ +W+S+A+ARQR GRAGR +PGIC+ LY++ R L +QVPE+ RMP+ EL
Sbjct: 1009 KKLSSMVEDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPLVEL 1068
Query: 400 CLQVKLLDPNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPV 459
CLQ+KLL + I+ FL + L+PP + +AI++L ++GA+ DE+LT LG L LPV
Sbjct: 1069 CLQIKLLGLGH-IKPFLSRALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKLPV 1127
Query: 460 HPLTSKMLFFAILMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYG--- 516
L KML + + CL P L++A Y+ PF P +EK+ K + S G
Sbjct: 1128 DVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYP--KDEKQNVDRVKLALLSDNGVSS 1185
Query: 517 -------GYSDQLAVIAAFECW-KNAKARGQEL--QFCSQYFISPGIMNMLDGMRKQLQA 566
SD L ++ A++ W K + RG + +FC F+S +M M+ MR Q
Sbjct: 1186 SDLNNNDRQSDHLLMMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGT 1245
Query: 567 ELIRNGFIE--------------------DGVSCCNLNAHDQGILHSVLVAGLYPMVG-- 604
L G I D N+ + ++ ++L AGLYP +
Sbjct: 1246 LLADIGLINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLYPNIAAN 1305
Query: 605 ----------RFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEI 654
N + + G +V +HP S+N N F+ P +V+ E
Sbjct: 1306 DKGITETTFNSLTKQGNQTKSYSAWYDGRREVHIHPSSINSNFKAFQN----PFLVFLEK 1361
Query: 655 TRGDGGMHIRNCTIVGPLPLLLLATEIVV 683
+ +++R+ TIV P +LL I V
Sbjct: 1362 VETN-KVYLRDTTIVSPFSILLFGGSINV 1389
>AT1G48650.1 | Symbols: | helicase domain-containing protein |
chr1:17989670-17995169 REVERSE
Length = 1197
Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 179/504 (35%), Positives = 277/504 (54%), Gaps = 26/504 (5%)
Query: 188 KQENQQETAEVIKRH--VESALTDSLKQQQL------LDKYLEKINPELIDVVLIEQLLR 239
K Q+ A+ KR + SA+ D+L+ L +P+ I LIE +L
Sbjct: 511 KTWKMQKQAQFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLC 570
Query: 240 KICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKR 299
I + GA+L+F+ GWD IN + +L A+ D +K ++++ H + + EQ+ +F R
Sbjct: 571 HIVKGERPGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLACHGSMASSEQRLIFDR 630
Query: 300 PPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQR 359
PP+G RKI+L+TN+AE++ITI+DVVYVID G+ KE SYD N L +W+SKA+ARQR
Sbjct: 631 PPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 690
Query: 360 EGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKT 419
GRAGR PG CYHLY + + D+Q PE+ R P++ LCLQ+K L I +FL +
Sbjct: 691 RGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLG-SISEFLSRA 749
Query: 420 LDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPA 479
L PP ++ NA+ L+ IGAL DE LT LG+ L LPV P KML + NCLDP
Sbjct: 750 LQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPV 809
Query: 480 LTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQ 539
+T+ RDPF +P + +KF YSD L ++ A+ WK+A+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRD----YSDHLTLVRAYNGWKDAERTHS 865
Query: 540 ELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGL 599
+C + F+S + +D MRKQ L++ + D + C+ +HD+ ++ +++ AG+
Sbjct: 866 GYDYCWKNFLSSQTLKAMDSMRKQF-FNLLKEASLIDNIEGCSKLSHDEHLVRAIICAGM 924
Query: 600 YPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYN--KLTFKKADDCPLIVYDEITRG 657
+P V + + K ++T G +V L+ S+N N + F P +V+++ +
Sbjct: 925 FPGVCSVVNKE--KSITLKTMEDG-QVLLYSSSVNGNVPMIPF------PWLVFNDKVKV 975
Query: 658 DGGMHIRNCTIVGPLPLLLLATEI 681
+ + +R+ T V LLL +I
Sbjct: 976 N-SVFLRDSTAVSDSVLLLFGDKI 998
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV 42
D+LP P L+LILMSATL+A FS YFGG P + +PGFTYPV
Sbjct: 441 DLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPV 482
>AT1G48650.2 | Symbols: | helicase domain-containing protein |
chr1:17989517-17995169 REVERSE
Length = 1206
Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/504 (35%), Positives = 277/504 (54%), Gaps = 26/504 (5%)
Query: 188 KQENQQETAEVIKRH--VESALTDSLKQQQL------LDKYLEKINPELIDVVLIEQLLR 239
K Q+ A+ KR + SA+ D+L+ L +P+ I LIE +L
Sbjct: 511 KTWKMQKQAQFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLC 570
Query: 240 KICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKR 299
I + GA+L+F+ GWD IN + +L A+ D +K ++++ H + + EQ+ +F R
Sbjct: 571 HIVKGERPGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLACHGSMASSEQRLIFDR 630
Query: 300 PPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQR 359
PP+G RKI+L+TN+AE++ITI+DVVYVID G+ KE SYD N L +W+SKA+ARQR
Sbjct: 631 PPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQR 690
Query: 360 EGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKT 419
GRAGR PG CYHLY + + D+Q PE+ R P++ LCLQ+K L I +FL +
Sbjct: 691 RGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLG-SISEFLSRA 749
Query: 420 LDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPA 479
L PP ++ NA+ L+ IGAL DE LT LG+ L LPV P KML + NCLDP
Sbjct: 750 LQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPV 809
Query: 480 LTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQ 539
+T+ RDPF +P + +KF YSD L ++ A+ WK+A+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRD----YSDHLTLVRAYNGWKDAERTHS 865
Query: 540 ELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGL 599
+C + F+S + +D MRKQ L++ + D + C+ +HD+ ++ +++ AG+
Sbjct: 866 GYDYCWKNFLSSQTLKAMDSMRKQF-FNLLKEASLIDNIEGCSKLSHDEHLVRAIICAGM 924
Query: 600 YPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYN--KLTFKKADDCPLIVYDEITRG 657
+P V + + K ++T G +V L+ S+N N + F P +V+++ +
Sbjct: 925 FPGVCSVVNKE--KSITLKTMEDG-QVLLYSSSVNGNVPMIPF------PWLVFNDKVKV 975
Query: 658 DGGMHIRNCTIVGPLPLLLLATEI 681
+ + +R+ T V LLL +I
Sbjct: 976 N-SVFLRDSTAVSDSVLLLFGDKI 998
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 33/42 (78%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV 42
D+LP P L+LILMSATL+A FS YFGG P + +PGFTYPV
Sbjct: 441 DLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPV 482
>AT5G04895.1 | Symbols: | ATP binding / ATP-dependent helicase/
double-stranded RNA binding / helicase/ nucleic acid
binding | chr5:1428796-1434516 FORWARD
Length = 1161
Score = 278 bits (710), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 275/505 (54%), Gaps = 25/505 (4%)
Query: 185 DWAKQENQQETAEVIKRHVESALTDSLKQQQLLDKYLEKIN-----------PELIDVVL 233
D+ +++ + +++ R ++ +T +L ++ L E N P+ I L
Sbjct: 467 DYGQEKTWKTQKQLMPRKRKNQIT-TLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNL 525
Query: 234 IEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQ 293
IE +L IC + GA+L+FL GWD I +++ A+P D ++ +++ H + T EQ
Sbjct: 526 IEAVLCHICRKERPGAVLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQ 585
Query: 294 KKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSK 353
+ +F+R P RKI+L+TN+AE++ITI+DVV+V+D G+ KE +YD N L +W+S+
Sbjct: 586 RLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQ 645
Query: 354 ASARQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIE 413
ASARQR GRAGR PG CYHLY K + ++Q+PE+ R P+ LCLQ+K L I
Sbjct: 646 ASARQRRGRAGRLFPGECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVE-SIA 704
Query: 414 DFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILM 473
+FL L P + NAI L+ IGAL E LT+LG+ L LPV P KML +
Sbjct: 705 EFLSAALQAPESLAVQNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIF 764
Query: 474 NCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKN 533
C DP LT+ RDPF LP ++K A++AK ++ YSD +A++ AFE WK+
Sbjct: 765 RCFDPILTIVSGLSVRDPFLLP--QDKKDLALSAKLRFSA--KDYSDHMALVRAFEGWKD 820
Query: 534 AKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHS 593
A+ G +FC + F+S + + +RKQ L G + D ++ N +H+Q ++ +
Sbjct: 821 AEREGSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVHDDLALNNKLSHNQSLVRA 880
Query: 594 VLVAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDE 653
V+ +GL+P + + + F + +V L+ +S+N T P +V+ E
Sbjct: 881 VICSGLFPGIASVVHRETSMSFK---TMDDGQVSLYANSVNSRFPTIP----YPWLVFGE 933
Query: 654 ITRGDGGMHIRNCTIVGPLPLLLLA 678
+ + + IR+ T V L+L
Sbjct: 934 KVKVNAVL-IRDSTGVPDSSLILFG 957
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV 42
++LP P LRL+LMSATL+A FS Y+GG P I +PGFT+PV
Sbjct: 402 ELLPRRPDLRLVLMSATLNAELFSNYYGGAPTIHIPGFTHPV 443
>AT1G58050.1 | Symbols: | helicase domain-containing protein |
chr1:21478590-21487839 REVERSE
Length = 1417
Score = 275 bits (704), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 176/494 (35%), Positives = 265/494 (53%), Gaps = 39/494 (7%)
Query: 224 INPELIDVVLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIIS 283
I ++D L+E+L+ I ++GAIL+FLPG IN RL A+ F+ +S ++
Sbjct: 859 IASAVVDYDLLEELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLP 918
Query: 284 LHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNV 343
LHS + + EQKKVF RPP+G RK+I++TNIAE++ITI+DVVYVIDSG+ KE Y+P++ +
Sbjct: 919 LHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKL 978
Query: 344 STLHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASLPD-FQVPEIKRMPIEELCLQ 402
S++ +WVSKA+ARQR GRAGR +PG C+ LY++ R L +QVPE+ R+P+ ELCL
Sbjct: 979 SSMVEDWVSKANARQRMGRAGRVKPGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVELCLH 1038
Query: 403 VKLLDPNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPL 462
+KLL +I+ FL K L+PP I++AI +L +GAL DE+LT LG L LPV L
Sbjct: 1039 IKLLGLG-QIKPFLSKALEPPSESAINSAILLLHKVGALEGDEELTPLGHHLAKLPVDLL 1097
Query: 463 TSKMLFFAILMNCLDPALTLAC-ASDYRDPFTLPVLPNEKKRA----IAAKFEIASLYGG 517
KML + + CL P L++A S + PF R ++ K E +S
Sbjct: 1098 IGKMLLYGGIFGCLSPILSIAAFLSCCKSPFVYAKDEQNVDRVKLALLSDKLESSSNLNN 1157
Query: 518 ---YSDQLAVIAAFECWK---NAKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRN 571
SD L ++ A+E W + + FC F++ +M M+ R + L
Sbjct: 1158 NDRQSDHLLMVVAYEKWVRILHEQGFKAAESFCESKFLNSSVMRMMRERRVEFGMLLADI 1217
Query: 572 GFIE-----------------DGVSCCNLNAHDQGILHSVLVAGLYP-----MVGRFLPP 609
G I D N+ + + ++ ++L AGL P +V R P
Sbjct: 1218 GLINLPKGKGRRKENFDVWFSDKTQPFNMYSQEPEVVKAILCAGLCPNIAEGLVNRLTKP 1277
Query: 610 KNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEITRGDGGMHIRNCTIV 669
+ + G +V +H +S+N N F+ P IV+ E +++++ T+V
Sbjct: 1278 AEETQRYAVWHDGKREVHIHRNSINKNCKAFQ----YPFIVFLEKLETKKVVYLQDTTVV 1333
Query: 670 GPLPLLLLATEIVV 683
P +LL I V
Sbjct: 1334 SPFSILLFGGSINV 1347
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 7 PHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPVISF 45
P L++ILMSAT+DA +FS+YFG CPII G T+PV ++
Sbjct: 752 PKLKVILMSATVDAHQFSRYFGQCPIITAQGRTHPVTTY 790
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE
Length = 1168
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 230/463 (49%), Gaps = 37/463 (7%)
Query: 220 YLEKINPELIDVVLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLA--NPFFKDSS 277
Y ++ + +D LI L +I + +G IL+FL G + I+ + L K+
Sbjct: 698 YTKQPETDYLDAALITVL--QIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVP 755
Query: 278 KFVIISLHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSY 337
+ +I+ ++S +P+ Q ++F PP G RK++++TNIAE+++TID + YV+D G K+ Y
Sbjct: 756 ELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVY 815
Query: 338 DPYQNVSTLHSNWVSKASARQREGRAGRCQPGICYHLYSK-LRAASLPDFQVPEIKRMPI 396
+P Q + +L +S+ASA+QR GRAGR PG CY LY++ +P +PEI+R+ +
Sbjct: 816 NPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINL 875
Query: 397 EELCLQVKLLDPNYKIE-DFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLG 455
L +K + N + DF +DPP P+ + +A+ L +GAL + LT+LG K+
Sbjct: 876 GMTTLTMKAMGINDLLSFDF----MDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMA 931
Query: 456 CLPVHPLTSKMLFFAILMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLY 515
P+ P SKML ++ + C D LT+ + F P +++ A + A +
Sbjct: 932 EFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRP-----REKQAQADQKRAKFF 986
Query: 516 GGYSDQLAVIAAFECWKNAKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIE 575
D L ++A +E WK G +C + FI + +RKQL + I + +
Sbjct: 987 QPEGDHLTLLAVYEAWKAKNFSG---PWCFENFIQSRSLRRAQDVRKQLLS--IMDKYKL 1041
Query: 576 DGVSCCNLNAHDQGILHSVLVAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNY 635
D V+ + + + AG + G P+ G R T V V +HP S
Sbjct: 1042 DVVTA----GKNFTKIRKAITAGFF-FHGARKDPQEGYR----TLVENQPVYIHPSS--- 1089
Query: 636 NKLTFKKADDCPLIVYDEITRGDGGMHIRNCTIVGPLPLLLLA 678
F++ D ++Y ++ ++R T++ P L+ LA
Sbjct: 1090 --ALFQRQPDW--VIYHDLVM-TTKEYMREVTVIDPKWLVELA 1127
>AT2G35340.1 | Symbols: MEE29 | MEE29 (maternal effect embryo arrest
29); ATP binding / ATP-dependent RNA helicase/
ATP-dependent helicase/ helicase/ nucleic acid binding |
chr2:14872728-14879615 FORWARD
Length = 1044
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 197/394 (50%), Gaps = 36/394 (9%)
Query: 248 GAILIFLPGWDGINKTRERLLAN--PFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGCR 305
G +L+FLPG + I E L + +I +++ +P+ Q K+F+ P+G R
Sbjct: 613 GDVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGAR 672
Query: 306 KIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAGR 365
K++L+TNIAE+++TID + YV+D G K KSY+P + +L +SKASA QR GRAGR
Sbjct: 673 KVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISKASATQRTGRAGR 732
Query: 366 CQPGICYHLYSKLRAAS-LPDFQVPEIKRMPIEELCLQVKLLDPNYKIE-DFLRKTLDPP 423
PG CY LY+ + L D VPEI+R + + L +K L + + DF +DPP
Sbjct: 733 TSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGIHNLLNFDF----MDPP 788
Query: 424 VPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPALTLA 483
E + ++ +L +GAL+ +LT+ G ++ P+ P+ SKM+ + C D +++A
Sbjct: 789 PSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIA 848
Query: 484 CASDYRDPFTLPVLPN----EKKRAIAAKFEIASLY-GGYSDQLAVIAAFECWKNAKARG 538
L + P+ K + + A + + + G D +A + + WK
Sbjct: 849 A--------MLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKET---N 897
Query: 539 QELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAG 598
Q+C + +I M +R QL+ L R +E VS NA++ + +VAG
Sbjct: 898 YSTQWCYENYIQVRSMKRARDIRDQLEGLLER---VEIDVSS---NANELDSIRKSIVAG 951
Query: 599 LYPMV------GRFLPPKNGKRFHIETAVGGAKV 626
+P G + K+ + HI A G ++V
Sbjct: 952 FFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQV 985
>AT1G32490.1 | Symbols: EMB2733, ESP3 | ESP3 (ENHANCED SILENCING
PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/
ATP-dependent helicase/ helicase/ nucleic acid binding |
chr1:11742356-11749286 REVERSE
Length = 1044
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 199/391 (50%), Gaps = 29/391 (7%)
Query: 248 GAILIFLPGWDGINKTRERLLANPFFKDSSK---FVIISLHSMVPTMEQKKVFKRPPQGC 304
G IL+F G + I +T E +L + +K +I +++ +P+ Q K+F+ P+G
Sbjct: 613 GDILVFFTGQEEI-ETAEEILKHRIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGA 671
Query: 305 RKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAG 364
RK++L+TNIAE+++TID + YV+D G K KSY+P + +L +SKASA QR GRAG
Sbjct: 672 RKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISKASATQRAGRAG 731
Query: 365 RCQPGICYHLYSKLRAAS-LPDFQVPEIKRMPIEELCLQVKLLDPNYKIE-DFLRKTLDP 422
R PG CY LY+ + L + VPE++R + + L +K L + I DF +DP
Sbjct: 732 RTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDLINFDF----MDP 787
Query: 423 PVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPALTL 482
P E + ++ +L +GAL+ +LT+ G ++ P+ P+ SKM+ + C D +++
Sbjct: 788 PPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISI 847
Query: 483 ACASDYRDPFTLPVLPNEKK-RAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQEL 541
A ++ P +K+ A A+ + G D +A++ + WK
Sbjct: 848 AAMLSI--GGSIFYRPKDKQVHADNARMNFHT--GNVGDHIALLKVYSSWKETNF---ST 900
Query: 542 QFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGLYP 601
Q+C + +I M +R QL+ L R +E +S NLN D + +VAG +P
Sbjct: 901 QWCYENYIQVRSMKRARDIRDQLEGLLER---VEIDIS-SNLNELDS--VRKSIVAGFFP 954
Query: 602 MVGRFLPPKNGKRFHIETAVGGAKVRLHPHS 632
+ KNG T V +HP+S
Sbjct: 955 HTAKL--QKNGS---YRTVKHPQTVHIHPNS 980
>AT5G13010.1 | Symbols: EMB3011 | EMB3011 (embryo defective 3011); ATP
binding / RNA helicase/ helicase/ nucleic acid binding |
chr5:4122747-4128660 FORWARD
Length = 1226
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 174/334 (52%), Gaps = 24/334 (7%)
Query: 241 ICIDSKDGAILIFLPGWDGIN------KTRERLLANPFFKDSSKFVIISLHSMVPTMEQK 294
I I S G ILIF+ G D I K R L + ++ + +I+ ++S +P Q
Sbjct: 731 IHITSPPGDILIFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQA 790
Query: 295 KVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKA 354
K+F++P G RK I++TNIAE+++T+D + YVID+G K K ++P + L +S+A
Sbjct: 791 KIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRA 850
Query: 355 SARQREGRAGRCQPGICYHLYSKLRAASLPDF---QVPEIKRMPIEELCLQVKLLDPNYK 411
++ QR GRAGR PG CY LY++ +A L + VPEI+R + + L +K L K
Sbjct: 851 ASDQRAGRAGRTGPGTCYRLYTE--SAYLNEMLPSPVPEIQRTNLGNVVLLLKSL----K 904
Query: 412 IEDFLR-KTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFA 470
I++ L +DPP E I N++ L +GAL+ LT+LG K+ P+ P +KML
Sbjct: 905 IDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMG 964
Query: 471 ILMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFEC 530
++C+D LT+ F P E+ A KF + SD L ++ ++
Sbjct: 965 ERLDCIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPE-----SDHLTLLNVYQQ 1019
Query: 531 WKNAKARGQELQFCSQYFISPGIMNMLDGMRKQL 564
WK RG +C+ +++ + +R QL
Sbjct: 1020 WKEHDYRG---DWCNDHYLQVKGLRKAREVRSQL 1050
>AT1G26370.1 | Symbols: | RNA helicase, putative |
chr1:9122030-9125368 REVERSE
Length = 717
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 149/504 (29%), Positives = 240/504 (47%), Gaps = 55/504 (10%)
Query: 196 AEVIKRHVESALTDSLKQQQLLDKYLEKINPE--LIDVVLIEQLLRKICIDSKDGAILIF 253
A V + A ++ +Q L ++PE +D L+ + +I + K G IL+F
Sbjct: 240 ARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYVDATLV--TIFQIHFEEKPGDILVF 297
Query: 254 LPGWDGINKT----RERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGCRKIIL 309
L G D I +ERL P +D K + +++ S +P+ +Q KVF P G RK+IL
Sbjct: 298 LTGQDEIESVERLVQERLQNIP--EDKRKLLPLAIFSALPSEQQMKVFAPAPTGFRKVIL 355
Query: 310 STNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAGRCQPG 369
+TNIAE++ITI + YVID G +K +SYDP + + +L SKA QR GRAGR PG
Sbjct: 356 ATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQTLQRSGRAGREGPG 415
Query: 370 ICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLR-KTLDPPVPETI 428
+ LY + L D PEIKR + + LQ+K L I+D + +D P I
Sbjct: 416 KSFRLYPEREFEKLEDSTKPEIKRCNLSNIILQLKALG----IDDIVGFDFIDKPSRGAI 471
Query: 429 HNAITVLQDIGALSLDEQLTE-LGEKLGCLPVHPLTSKMLFFAILMNCLDPAL----TLA 483
A+ L +GAL+ D +L +G ++ LP+ P+ SK L A NCL+ L L+
Sbjct: 472 IKALAELHSLGALADDGKLENPVGYQMSRLPLEPVYSKALILANQFNCLEEMLITVAVLS 531
Query: 484 CASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIA---AFECWKNAKARGQE 540
S + DP +++ A +K AS+ G + L+V F + A G
Sbjct: 532 VESIFYDP------REKREEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRKAAGSGNN 585
Query: 541 L-----QFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVL 595
+ ++C + +++ + + +Q++ + + GF VS C +D L
Sbjct: 586 IDKIMKKWCKENYVNSRSLKHARDIYRQIREHVEQIGF---NVSSC---GNDMLAFRRCL 639
Query: 596 VAGLY-PMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEI 654
A + R L +G +E+ G V +HP S + F+ +C ++++E+
Sbjct: 640 AASFFLKAAQRQL---DGTYRALES---GEVVHIHPTS-----VLFRAKPEC--VIFNEL 686
Query: 655 TRGDGGMHIRNCTIVGPLPLLLLA 678
+ +I+N TI+ L L LA
Sbjct: 687 MQ-TSKKYIKNLTIIDSLWLSELA 709
>AT1G27900.1 | Symbols: | RNA helicase, putative |
chr1:9715615-9720346 REVERSE
Length = 700
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 168/339 (49%), Gaps = 24/339 (7%)
Query: 240 KICID----SKDGAILIFLPGWDGINKTRERL------LANPFFKDSSKFVIISLHSMVP 289
K+ ID +G ILIF+ G D I K RL LA D+ +I LH +P
Sbjct: 202 KVAIDIHVREPEGDILIFMTGQDDIEKLVSRLEEKVRSLAEGSCMDA---IIYPLHGSLP 258
Query: 290 TMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSN 349
Q +VF PP CR+ I+STNIAE+++T+D VVYVIDSG +K++ Y+P + +L
Sbjct: 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVI 318
Query: 350 WVSKASARQREGRAGRCQPGICYHLYS-KLRAASLPDFQVPEIKRMPIEELCLQVKLLD- 407
+SK A QR GRAGR +PG CY LY + D +PEI+R + L +K LD
Sbjct: 319 QISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDL 378
Query: 408 PNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKML 467
P+ I F LD P E++ +A+ L I A+ + +T +G + LP+ P S+ L
Sbjct: 379 PDIDILKF--DFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTL 436
Query: 468 FFAILMNCLDPALTLACASDYRDPFTLPVL--PNEKKRAIAAKFEIASLYGGYSDQLAVI 525
A CL ALT+ LP P+EKKR + + GY D + ++
Sbjct: 437 IEANETGCLSQALTVVAMLSAETTL-LPARSKPSEKKRKHDEDSNLPN-GSGYGDHIQLL 494
Query: 526 AAFECWKNAKARGQELQFCSQYFISPGIMNMLDGMRKQL 564
FE W + +C + + M + +R+QL
Sbjct: 495 QIFESWDRT---NYDPVWCKENGMQVRGMVFVKDVRRQL 530
>AT4G18465.1 | Symbols: | RNA helicase, putative |
chr4:10197056-10201611 FORWARD
Length = 704
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 215/432 (49%), Gaps = 40/432 (9%)
Query: 248 GAILIFLPGWDGINKTRERLL---ANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGC 304
G +L+FL G + I +T +LL A+ K+SS + + L+S + EQ+ +F P+G
Sbjct: 285 GDVLVFLTGQEDI-ETAIKLLEEEAHSNQKNSSGLLPLPLYSGLSRSEQELIFTPTPRGK 343
Query: 305 RKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAG 364
RK+ILSTNIAE+++T++ VVYVIDSG K+K Y+P ++ +L +SKASARQR GRAG
Sbjct: 344 RKVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAG 403
Query: 365 RCQPGICYHLYSK-LRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKTLD-- 421
R +PG CY LY++ +P +PE++R + +Q+K L I++ L D
Sbjct: 404 RVRPGKCYRLYTEDYFLNQMPGEGIPEMQRSNLVSTVIQLKALG----IDNIL--GFDWP 457
Query: 422 -PPVPETIHNAITVLQDIGALSLDEQLTE-LGEKLGCLPVHPLTSKMLFFAILMNCLDPA 479
PP E + A+ VL + L D +LT G ++ LP+ P+ SKM+ + + C
Sbjct: 458 APPSSEAMIRALEVLYSLQILDDDAKLTSPTGFQVAELPLDPMISKMILASSELGCSHEI 517
Query: 480 LTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQ 539
+T+A + + + +K AK A+ G D + + ++ + +K +
Sbjct: 518 ITIAAVLSVQSVWI--IARGVQKEQDEAKLRFAAAEG---DHVTFLNVYKGFLESK---K 569
Query: 540 ELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGL 599
Q+C + F++ M + +R QL+ R G + C+ D + + AG
Sbjct: 570 PTQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGIT---LKSCD---GDMEAVRKAVTAGF 623
Query: 600 YPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVYDEITRGDG 659
+ R P NG +T G +V +HP S+ + + +VY I +
Sbjct: 624 FANACRLEPHSNGV---YKTIRGSEEVYIHPSSVLFRV-------NPKWVVYQSIVSTE- 672
Query: 660 GMHIRNCTIVGP 671
++RN + P
Sbjct: 673 RQYMRNVVTINP 684
>AT3G62310.1 | Symbols: | RNA helicase, putative |
chr3:23057516-23060561 REVERSE
Length = 726
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 186/395 (47%), Gaps = 32/395 (8%)
Query: 248 GAILIFLPGWDGINKTRERL--LANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGC- 304
G IL+FL G + I ++ ++ L+S +P Q+K+F P+
Sbjct: 276 GDILVFLTGEEEIEDACRKINKEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVT 335
Query: 305 ------RKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQ 358
RKI++STNIAE+++TID +VYVID G K+K Y+P V +L + +SKASA Q
Sbjct: 336 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQ 395
Query: 359 REGRAGRCQPGICYHLYS-KLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLR 417
R GRAGR +PG C+ LY+ K L PEI R + L +K L I+D +
Sbjct: 396 RSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLG----IDDLVH 451
Query: 418 -KTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCL 476
+DPP PET+ A+ VL +GAL D LT+ GE + P+ P +KML + NC
Sbjct: 452 FDFMDPPAPETLMRALEVLNYLGALDDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCS 511
Query: 477 DPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKA 536
+ L+++ + F P +K A AK + G + L V AF K
Sbjct: 512 NEILSVSAMLSVPNCFIRPR--EAQKAADEAKARFGHIEGDHLTLLNVYHAF------KQ 563
Query: 537 RGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGI-LHSVL 595
++ +C + FI+ M D +R+QL + R + + N+ D I + +
Sbjct: 564 NNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL---KMCSTDFNSRDYYINIRKAM 620
Query: 596 VAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHP 630
+AG + V + H T V LHP
Sbjct: 621 LAGYFMQVAHL-----ERTGHYLTVKDNQVVHLHP 650
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV-ISFSRWSLTIYLISACK 59
++L + P L+L++MSATL+A +F YF G P+++VPG +PV I +++ YL +A +
Sbjct: 205 EVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIR 264
Query: 60 LI 61
+
Sbjct: 265 TV 266
>AT4G16680.1 | Symbols: | RNA helicase, putative |
chr4:9388071-9390774 REVERSE
Length = 883
Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 188/389 (48%), Gaps = 27/389 (6%)
Query: 248 GAILIFLPGWDGINKTRERLLAN--PFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGCR 305
G IL+FL G + I L S+ +I ++S +PT Q KVF+ P+G R
Sbjct: 431 GDILVFLTGQEEIETVETNLKRRMMDLGTKGSEIIICPIYSNLPTPLQAKVFEPAPKGTR 490
Query: 306 KIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAGR 365
K++L+TNIAE+++TID V YVID G K SY+P + +L +SKASA QR GR+GR
Sbjct: 491 KVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISKASAAQRAGRSGR 550
Query: 366 CQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIED-FLRKTLDPPV 424
PG C+ LY+ L +PEI+R + + L +K L I+D F +DPP
Sbjct: 551 TGPGKCFRLYN---IKDLEPTTIPEIQRANLASVVLTLKSLG----IQDVFNFDFMDPPP 603
Query: 425 PETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPALTLAC 484
+ A+ +L +GAL ++T++GE++ PV P+ SKM+ + C +T+A
Sbjct: 604 ENALLKALELLYALGALDEIGEITKVGERMVEFPVDPMLSKMIVGSEKYKCSKEIITIAA 663
Query: 485 A-SDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQELQF 543
S F P N++ A A+ + D +A++ + WK Q+
Sbjct: 664 MLSVGNSVFYRP--KNQQVFADKARMDFYEDTENVGDHIALLRVYNSWKEE---NYSTQW 718
Query: 544 CSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGILHSVLVAGLYPMV 603
C + FI M +R QL L + G +E N +D + ++AG +P
Sbjct: 719 CCEKFIQSKSMKRARDIRDQLLGLLNKIG-VE-----LTSNPNDLDAIKKAILAGFFPHS 772
Query: 604 GRFLPPKNGKRFHIETAVGGAKVRLHPHS 632
+ KNG ++ V +HP+S
Sbjct: 773 AKL--QKNGSYRRVKEP---QTVYVHPNS 796
>AT2G47250.1 | Symbols: | RNA helicase, putative |
chr2:19399923-19402981 REVERSE
Length = 729
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 188/395 (47%), Gaps = 32/395 (8%)
Query: 248 GAILIFLPGWDGINKTRERL--LANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPP---- 301
G IL+FL G + I ++ + ++ L+S +P Q+K+F P
Sbjct: 280 GDILVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLT 339
Query: 302 ---QGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQ 358
RKI++STNIAE+++TID +VYVID G K+K Y+P V +L + +SKASA Q
Sbjct: 340 EGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQ 399
Query: 359 REGRAGRCQPGICYHLYS-KLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLR 417
R GRAGR +PG C+ LY+ K L PEI R + L +K L I+D +
Sbjct: 400 RSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLG----IDDLVH 455
Query: 418 -KTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCL 476
+DPP PET+ A+ VL +GAL + LT+ GE + P+ P SKML + NC
Sbjct: 456 FDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCS 515
Query: 477 DPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKA 536
+ L+++ + F P +K A AK + G D L ++ + +K
Sbjct: 516 NEILSVSAMLSVPNCFVRP--REAQKAADEAKARFGHIDG---DHLTLLNVYHAYKQ--- 567
Query: 537 RGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGI-LHSVL 595
++ +C + F++ M D +R+QL + R + + N+ D + + +
Sbjct: 568 NNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNL---KMCSTDFNSRDYYVNIRKAM 624
Query: 596 VAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHP 630
+AG + V + G H T V LHP
Sbjct: 625 LAGYFMQVAHL--ERTG---HYLTVKDNQVVHLHP 654
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 DILPSHPHLRLILMSATLDAARFSQYFGGCPIIRVPGFTYPV-ISFSRWSLTIYLISACK 59
++L + P L+L++MSATL+A +F +YF G P+++VPG +PV I +++ YL +A +
Sbjct: 209 EVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIR 268
Query: 60 LI 61
+
Sbjct: 269 TV 270
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD
Length = 1775
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 27/393 (6%)
Query: 246 KDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGCR 305
K+G IL FL + ER + + + + LH + EQ +VF+ P G R
Sbjct: 523 KEGTILAFLTSQAEVEWACERFI-------TPSAIALPLHGKLSFEEQFRVFQNHP-GRR 574
Query: 306 KIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAGR 365
K+I +TNIAE+++TI V YVIDSG +KE Y+P +S L VS++SARQR GRAGR
Sbjct: 575 KVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVSQSSARQRAGRAGR 634
Query: 366 CQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKTLDPPVP 425
+PG CY LYSK S+ Q PEI+R+ + L++ L N I +F +D PVP
Sbjct: 635 TEPGRCYRLYSKNDFDSMNLNQEPEIRRVHLGVALLRMLALGVN-NIAEF--NFVDAPVP 691
Query: 426 ETIHNAITVLQDIGALSLDEQLTELGEKLGC---LPVHPLTSKMLFFAILMNCLDPALTL 482
E I A+ L +GA+ + EL ++ C L + P K++ + L
Sbjct: 692 EAIAMAVQNLVQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVL 751
Query: 483 ACA-SDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQEL 541
A ++ F ++K +A K + + G D +++ ++ W + R +
Sbjct: 752 AAVMANASSIFCRVGNFDDKMKADRLKVQFCNQNG---DLFTLLSVYKEWASL-PRERRN 807
Query: 542 QFCSQYFISPGIMNMLDGMRKQLQAELIRN-GFIEDGVSCCNLN---AHDQGILHSVLVA 597
++C + ++ M + K+L+ + R + N N HD+ L V++A
Sbjct: 808 KWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHDKH-LKMVILA 866
Query: 598 GLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHP 630
L V + + E A+ G +V+LHP
Sbjct: 867 SLAENVAMY---TGYNQLGYEVALTGQQVQLHP 896
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD
Length = 1787
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 11/212 (5%)
Query: 246 KDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTMEQKKVFKRPPQGCR 305
K+G IL FL + ER +A + + LH + EQ VF+ P G R
Sbjct: 520 KEGTILAFLTSQAEVEWACERFVA-------PSAIALPLHGKLSFEEQFMVFQNYP-GRR 571
Query: 306 KIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWVSKASARQREGRAGR 365
K+I +TNIAE+++TI V YVIDSG +KE Y+P +S L VS++SARQR GRAGR
Sbjct: 572 KVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGR 631
Query: 366 CQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYKIEDFLRKTLDPPVP 425
+PG CY LYSK S+ Q PEI+R+ + L++ L + I F + +D PVP
Sbjct: 632 TEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGID-NIAAF--EFVDAPVP 688
Query: 426 ETIHNAITVLQDIGALSLDEQLTELGEKLGCL 457
E I AI L +GA+ + EL ++ CL
Sbjct: 689 EAIAMAIQNLVQLGAVVEKNGVLELTQEGHCL 720
>AT1G33390.1 | Symbols: | helicase domain-containing protein |
chr1:12099738-12104108 REVERSE
Length = 1237
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 119/198 (60%), Gaps = 6/198 (3%)
Query: 278 KFVIISLHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSY 337
K ++ L++M+ Q +VF+ + R ++++TN+AE+++TI + YV+D+GR+K K+Y
Sbjct: 646 KLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNY 705
Query: 338 DPYQNVSTLHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASL-PDFQVPEIKRMPI 396
D + + +W+S+ASA QR GRAGR PG CY LYS +++ + +PEI ++P+
Sbjct: 706 DSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEIMKVPV 765
Query: 397 EELCLQVKLLD-PNYKIEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLG 455
+ + L +K ++ P K+E+F T PP P I A L+ + AL + LT LG+ +
Sbjct: 766 DGVILLMKSMNIP--KVENFPFPT--PPEPSAIREAERCLKALEALDSNGGLTPLGKAMS 821
Query: 456 CLPVHPLTSKMLFFAILM 473
P+ P S+ML I M
Sbjct: 822 HYPMSPRHSRMLLTVIQM 839
>AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase family
protein | chr2:19545828-19550871 REVERSE
Length = 1015
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 223 KINPELIDVVLIEQLLRKICIDSKD--GAILIFLPGWDGINKTRERLLANPFFKDSSKFV 280
+I PEL + LI L+ I D +IL+FLP + + + +L PFF + F
Sbjct: 246 EIKPELQN--LIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYHQL--EPFF---ASFE 298
Query: 281 IISLHSMVPTMEQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPY 340
+ LH + T EQ + + RK+IL+TNIAES++TI V YVIDS R + +DP
Sbjct: 299 VHILHRSIDT-EQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPS 357
Query: 341 QNVSTLHSNWVSKASARQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELC 400
+ + WVS++ A QR GR GR G Y L L + + P I ++ + +
Sbjct: 358 RKRDAVQLVWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQV 417
Query: 401 LQV 403
L +
Sbjct: 418 LHI 420
>AT5G14900.1 | Symbols: | helicase associated (HA2)
domain-containing protein | chr5:4822676-4823581 REVERSE
Length = 301
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 11/186 (5%)
Query: 420 LDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAILMNCLDPA 479
+D P P+T+ A+ L +GAL D LT+ GE + P+ P +KML + NC +
Sbjct: 25 IDSPAPDTLARALDDLYHLGALDDDCNLTKTGEMMSEFPLDPQMAKMLIVSPQFNCSNEI 84
Query: 480 LTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECWKNAKARGQ 539
L+++ + F P +K A AK A + G + L + AF Q
Sbjct: 85 LSISAMLSVPNCFIRP-RGEAQKAADEAKSSFAHIDGDHLTLLNLFHAF------LQNNQ 137
Query: 540 ELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGI-LHSVLVAG 598
+ +C FI+ M +R+QL ++R + + + N+ D + + L+AG
Sbjct: 138 DPNWCCTKFINYRAMKSAVSVREQLVRIMLR---FQIKLCSPDFNSRDYYVNIRKALLAG 194
Query: 599 LYPMVG 604
+ V
Sbjct: 195 YFMQVA 200