Jatropha Genome Database

JcCA0004001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0004001.10 + phase: 2 /TE/pseudo/partial
         (117 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H ...    47   3e-06

>AT5G42905.1 | Symbols:  | nucleic acid binding / ribonuclease H |
           chr5:17201414-17202323 REVERSE
          Length = 258

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           +GN   A  GGV+RD +G W  GF + +G  +   AEL  +++GL  AW+     V +E+
Sbjct: 157 RGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEV 216

Query: 64  DSK 66
           DS+
Sbjct: 217 DSE 219