Jatropha Genome Database

JcCA0003732.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.20 + phase: 0 
         (273 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20330.1 | Symbols:  | transcription initiation factor-relate...   314   3e-86
AT4G21010.1 | Symbols:  | transcription initiation factor-relate...   247   7e-66

>AT4G20330.1 | Symbols:  | transcription initiation factor-related |
           chr4:10982683-10984039 REVERSE
          Length = 286

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/282 (58%), Positives = 205/282 (72%), Gaps = 12/282 (4%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQ-KSIPAASTVTNTRTPGPPVKFSNDT 59
           MAL E+LD+F KQQ KCQSTL+ IA   + T +  +++P  + +T  +    PVKFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 60  ERLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPK 111
           ERLQ+IN+IRKAPVGAQ+K         + A TPEQIN+ C VD+ +NK VFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 112 VNYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQALKAAGKIWL 171
            +YDGR FSYK+ HD+ DKNQLLSL+ K+ +GIA +DLKDAYP V EDL+AL A+G I+L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 172 LSNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNGMKPATDTAKR 231
           LSN  SQEDIAYPND +  IKVDDE K LFR + + +DMLD+E++L+K G+KPAT+TA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 238

Query: 232 RAAAQVQGIXXXXXXXXXXXXX-XXRTKLTNAHLPELFRNLG 272
           RAAAQ  GI                RTKLTNAHLPELF+NL 
Sbjct: 239 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQNLN 280


>AT4G21010.1 | Symbols:  | transcription initiation factor-related |
           chr4:11226317-11227363 REVERSE
          Length = 275

 Score =  247 bits (630), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 141/282 (50%), Positives = 190/282 (67%), Gaps = 21/282 (7%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPAASTVTNTRTPGPPV---KFSN 57
           MAL E+LD+F KQQEKCQST       S++  ++  +PAA+T     +  P V   KFS 
Sbjct: 1   MALREQLDKFNKQQEKCQST-LSSISSSRTALSRSYVPAATT-----SQKPNVFRGKFSE 54

Query: 58  DTERLQHINSIRKAPVGAQMK--------HKTAFTPEQINDACFVDVKSNKTVFDSLRNN 109
           +T++LQHI +IR + VGAQMK         + A+T EQIN+AC+VD+ +NK VFDSLR N
Sbjct: 55  NTKQLQHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKN 114

Query: 110 PKVNYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQALKAAGKI 169
           PKV+YDGR FSYK+ H++KDK QLLS + K  + I   DLKDAYP V EDL++LK++G+I
Sbjct: 115 PKVHYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEI 174

Query: 170 -WLLSNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNGMKPATDT 228
            WLLSN DS+E   Y N+     K+DDELK LFR + +  DML++E++L+K G+KPAT+ 
Sbjct: 175 FWLLSNTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNI 232

Query: 229 AKRRAAAQVQGIXXXXXXXXXXXXX-XXRTKLTNAHLPELFR 269
           A+RRAA Q+ G+                RTKLTN+H+ ELF+
Sbjct: 233 AERRAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQ 274