Jatropha Genome Database

JcCA0003732.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.10 + phase: 1 /pseudo/partial
         (434 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION ...   113   3e-25
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);...   112   4e-25
AT4G21550.1 | Symbols: VAL3 | VAL3 (VP1/ABI3-LIKE 3); transcript...    61   1e-09

>AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF
           SUGAR-INDUCIBLE GENE 2); transcription factor/
           transcription repressor | chr2:12980904-12984724 REVERSE
          Length = 790

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 93/152 (61%), Gaps = 24/152 (15%)

Query: 1   TFSRIDPGGKLVMGFRKATN----------NSLDTQDAQTSTIP-NSAAITEASFSGIV- 48
           TFSR+DPGGKL+MG RKA N          N   T+D  +S +  N  +I  +S   ++ 
Sbjct: 378 TFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGTSTEDTSSSGVTENPPSINGSSCISLIP 437

Query: 49  ----------TSENHGGRVNGDALLQPTSEKKRTRNIGPKNKRLLMNSEDALELRLTWEE 98
                      SE +GGR+  D       EKKRTR IG KNKRLL++SE+++ELRLTWEE
Sbjct: 438 KELNGMPENLNSETNGGRIGDDPTR--VKEKKRTRTIGAKNKRLLLHSEESMELRLTWEE 495

Query: 99  AQDLLRPPPSVKPSIVAIEDHEFEEYDXATSF 130
           AQDLLRP PSVKP+IV IE+ E EEYD    F
Sbjct: 496 AQDLLRPSPSVKPTIVVIEEQEIEEYDEPPVF 527


>AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);
           transcription factor | chr4:15481231-15484897 FORWARD
          Length = 780

 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 14/140 (10%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPN--------SAAITEASFSGIVTSEN 52
           TFSR +P GKLVMG+RKATN S  TQ  + S+ PN        +    + ++S +  SE+
Sbjct: 369 TFSRTEPEGKLVMGYRKATN-STATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSED 427

Query: 53  HGGRVNGDALLQP--TSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVK 110
                  +  LQ   TS +KR RNIG K+KRLL++S D LEL++TWEEAQ+LLRPP S K
Sbjct: 428 MA---KDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTK 484

Query: 111 PSIVAIEDHEFEEYDXATSF 130
           PSI  +E+ +FEEYD    F
Sbjct: 485 PSIFTLENQDFEEYDEPPVF 504


>AT4G21550.1 | Symbols: VAL3 | VAL3 (VP1/ABI3-LIKE 3); transcription
           factor | chr4:11463987-11468486 FORWARD
          Length = 721

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 12/118 (10%)

Query: 2   FSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTSENHGGRVNGDA 61
           FSR+DP  KL++GFRKA+     TQ +  +   +  +  E   S  +T E  G       
Sbjct: 385 FSRLDPERKLILGFRKAS----ITQSSDQADPADMHSPFEVKKSAYITKETPG------- 433

Query: 62  LLQPTSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIEDH 119
            ++ +S KK++  +  ++KR  +   D   L+LTWEEAQ  L PPP++ PS V IED+
Sbjct: 434 -VECSSGKKKSSMMITRSKRQKVEKGDDNLLKLTWEEAQGFLLPPPNLTPSRVVIEDY 490