Jatropha Genome Database

JcCA0003592.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.10 + phase: 1 /partial
         (98 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35370.1 | Symbols: GDCH | GDCH; glycine dehydrogenase (decar...   121   1e-28
AT1G32470.1 | Symbols:  | glycine cleavage system H protein, mit...   120   2e-28
AT2G35120.1 | Symbols:  | glycine cleavage system H protein, mit...   107   2e-24

>AT2G35370.1 | Symbols: GDCH | GDCH; glycine dehydrogenase
           (decarboxylating) | chr2:14891239-14892050 FORWARD
          Length = 165

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 67/74 (90%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATS++ SPISGEI+EVN KL+E+PG INSSPYE+GWMIKVKPS+P+EL SL+  
Sbjct: 92  AVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGP 151

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 152 KEYTKFCEEEDAAH 165


>AT1G32470.1 | Symbols:  | glycine cleavage system H protein,
           mitochondrial, putative | chr1:11739479-11740246 REVERSE
          Length = 166

 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 68/74 (91%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATS++ SPISGE++EVN+KL+E+PG INSSPYE+GWMIKVKPS+P+EL +L+  
Sbjct: 93  AVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGP 152

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 153 KEYTKFCEEEDAAH 166


>AT2G35120.1 | Symbols:  | glycine cleavage system H protein,
           mitochondrial, putative | chr2:14805913-14807274 REVERSE
          Length = 156

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 63/74 (85%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSD+NSP+SG++VEVN +L+E+PG +NSSPYE+GW+IKV+ S+  E   L+D+
Sbjct: 83  AVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDS 142

Query: 85  KAYTKFCEEEDAAH 98
             Y+KFCEEEDA H
Sbjct: 143 DKYSKFCEEEDAKH 156