Jatropha Genome Database

JcCA0003212.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.20 - phase: 0 
         (151 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00100.1 | Symbols: ATRPS13A, RPS13, PFL2 | ATRPS13A (ARABIDO...   288   9e-79
AT3G60770.1 | Symbols:  | 40S ribosomal protein S13 (RPS13A) | c...   287   2e-78

>AT4G00100.1 | Symbols: ATRPS13A, RPS13, PFL2 | ATRPS13A
           (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A);
           structural constituent of ribosome | chr4:37172-38123
           FORWARD
          Length = 151

 Score =  288 bits (737), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 140/151 (92%), Positives = 148/151 (98%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK ++QDV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>AT3G60770.1 | Symbols:  | 40S ribosomal protein S13 (RPS13A) |
           chr3:22460525-22461656 REVERSE
          Length = 151

 Score =  287 bits (734), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/151 (92%), Positives = 147/151 (97%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151