Jatropha Genome Database

JcCA0002951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0002951.10 + phase: 0 
         (249 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21350.1 | Symbols:  | RNA polymerase transcriptional regulat...   312   2e-85
AT3G21350.2 | Symbols:  | RNA polymerase transcriptional regulat...   291   2e-79

>AT3G21350.1 | Symbols:  | RNA polymerase transcriptional regulation
           mediator-related | chr3:7517106-7518587 FORWARD
          Length = 257

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 173/229 (75%), Gaps = 2/229 (0%)

Query: 22  GTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQSIHPLDLSHLSKM 81
           GTDMTGI FRDQLW+N+YPLDRN IFDYFALSPFYD TCNNE LR +SIHPLDLSHLSKM
Sbjct: 30  GTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLSKM 89

Query: 82  TGMEYMLSEVMEPNLFVIRKQKRDSPEKVTPMLTYYILDGSIYQAPQLCNVFAARIGRAL 141
           TG+EYML++  EPNLFV RKQKRD PEKVTPMLTYYILDGSIYQAPQLC+VFAAR+ R +
Sbjct: 90  TGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRTI 149

Query: 142 YYISKAFTNAASKLEKIGYVD-EGEGVTSESKVGKELIDFKEVKRIDSILASLQRKLXXX 200
           Y ISKAFT+AASKLE I  VD E +   +ESK   E +D KE+KR+D IL SL RKL   
Sbjct: 150 YNISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPP 209

Query: 201 XXXXXXXXXXXXXXSTDTEKGAESQQGTESQPLAVDPIIDQGPAKRMKF 249
                         +   EK     QG ESQP  VDPIIDQGPAKRMKF
Sbjct: 210 PPPPPFPEGYVSQEALG-EKEELGTQGGESQPPQVDPIIDQGPAKRMKF 257


>AT3G21350.2 | Symbols:  | RNA polymerase transcriptional regulation
           mediator-related | chr3:7517106-7518587 FORWARD
          Length = 298

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/270 (57%), Positives = 172/270 (63%), Gaps = 43/270 (15%)

Query: 22  GTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQSIHPLDLSHLSKM 81
           GTDMTGI FRDQLW+N+YPLDRN IFDYFALSPFYD TCNNE LR +SIHPLDLSHLSKM
Sbjct: 30  GTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLSKM 89

Query: 82  TGMEYMLSEVMEPNLFVIRKQKRDSPEKVTPMLTYYILDGSIYQAPQLCNVFAARIGRAL 141
           TG+EYML++  EPNLFV RKQKRD PEKVTPMLTYYILDGSIYQAPQLC+VFAAR+ R +
Sbjct: 90  TGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRTI 149

Query: 142 YYISKAFTNAASKLEKIG------------------------------------------ 159
           Y ISKAFT+AASKLE I                                           
Sbjct: 150 YNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGEQVYGFNKFL 209

Query: 160 YVDEGEGVTSESKVGKELIDFKEVKRIDSILASLQRKLXXXXXXXXXXXXXXXXXSTDTE 219
           +  E +   +ESK   E +D KE+KR+D IL SL RKL                 +   E
Sbjct: 210 FDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGYVSQEALG-E 268

Query: 220 KGAESQQGTESQPLAVDPIIDQGPAKRMKF 249
           K     QG ESQP  VDPIIDQGPAKRMKF
Sbjct: 269 KEELGTQGGESQPPQVDPIIDQGPAKRMKF 298