Jatropha Genome Database

JcCA0000872.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000872.20 + phase: 0 
         (529 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32080.1 | Symbols:  | membrane protein, putative | chr1:1153...   689   0.0  

>AT1G32080.1 | Symbols:  | membrane protein, putative |
           chr1:11537572-11539756 REVERSE
          Length = 512

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/493 (73%), Positives = 403/493 (81%), Gaps = 7/493 (1%)

Query: 39  TKASIGVSNGVKIFRNHCQ-CNLQKTSVPITVLEPNSRFFRM-DSHETSYGRRIXXXXXX 96
           +K   G  NG  +  +  Q  NL K   P        RF +M  S E ++ R++      
Sbjct: 25  SKIRFGSKNGKILNSDGAQKLNLSKFRKP-----DGQRFLQMGSSKEMNFERKLSVQAMD 79

Query: 97  XXXXXXXITPSQSVSGILHLLVSLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVLL 156
                   T S++V  I HLLVSLGIILA D  LK+AFVAA+IKFPSALFGMFCIFSVL+
Sbjct: 80  GAGTGNTSTISRNVIAISHLLVSLGIILAADYFLKQAFVAASIKFPSALFGMFCIFSVLM 139

Query: 157 ILDSTIPAAATSLVNFFEPALLFIQRWXXXXXXXXXXXXXXXXRDIPAASGLKICYIVAG 216
           I DS +PAAA  L+NFFEPA LFIQRW                RDIPAASG+KICYIVAG
Sbjct: 140 IFDSVVPAAANGLMNFFEPAFLFIQRWLPLFYVPSLVVLPLSVRDIPAASGVKICYIVAG 199

Query: 217 GWLASLCVAGFTAITVRKIVKTEMTDAEPMKKPSPFSPLEVWAWSGIFLVSFVAALWFPT 276
           GWLASLCVAG+TAI VRK+VKTEMT+AEPM KPSPFS LE+W+WSGIF+VSFV AL++P 
Sbjct: 200 GWLASLCVAGYTAIAVRKMVKTEMTEAEPMAKPSPFSTLELWSWSGIFVVSFVGALFYPN 259

Query: 277 ALGTSARTCLPFLLASTVLGYMVGSGLPSSVKKAFHPIICCTLSADLAALAFGYLSHSGL 336
           +LGTSART LPFLL+STVLGY+VGSGLPSS+KK FHPIICC LSA LAALAFGY S SGL
Sbjct: 260 SLGTSARTSLPFLLSSTVLGYIVGSGLPSSIKKVFHPIICCALSAVLAALAFGYASGSGL 319

Query: 337 NPVLGYYLTKVSADPGAGDVLMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIFSTIF 396
           +PVLG YLTKV++DPGAGD+LMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVI ST+F
Sbjct: 320 DPVLGNYLTKVASDPGAGDILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIVSTVF 379

Query: 397 SLYSTALIGRLVGLEPTLTVSILPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGAN 456
           SLYSTAL+GRLVGLEP+LTVSILPRCITVALALSIVSLFEG NSSLTAAVVVVTGLIGAN
Sbjct: 380 SLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEGTNSSLTAAVVVVTGLIGAN 439

Query: 457 FVQFALDKLKFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICS 516
           FVQ  LDKL+ RDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSL+CS
Sbjct: 440 FVQVVLDKLRLRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLLCS 499

Query: 517 VPAVRQSLLAIIG 529
           VPAVRQSLLA++G
Sbjct: 500 VPAVRQSLLAVVG 512