Jatropha Genome Database

JcCA0000831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000831.20 - phase: 0 
         (475 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00490.1 | Symbols: RBCL | large subunit of RUBISCO. Protein ...   907   0.0  
AT2G07732.1 | Symbols:  | ribulose-bisphosphate carboxylase | ch...   205   4e-53
ATMG00280.1 | Symbols: ORF110A | hypothetical protein | chrM:778...   185   7e-47

>ATCG00490.1 | Symbols: RBCL | large subunit of RUBISCO. Protein is
           tyrosine-phosphorylated and its phosphorylation state is
           modulated in response to ABA in Arabidopsis thaliana
           seeds. | chrC:54958-56397 FORWARD
          Length = 479

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/475 (91%), Positives = 447/475 (94%)

Query: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
           MSPQTETKASVGFKAGVK+YKLTYYTPEY+TKDTDILAAFRVTPQ               
Sbjct: 1   MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 61  SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
           SSTGTWTTVWTDGLTSLDRYKGRCY IEPV GEE Q+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
           VGNVFGFKAL ALRLEDLRIP AYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
           SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYL
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYL 240

Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
           NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSL+HYCRDNGLLLHIHRAMHAV
Sbjct: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAV 300

Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
           IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEG+R+ TLGFVDLLRDD++EKDRSR
Sbjct: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYVEKDRSR 360

Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
           GI+FTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 361 GIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420

Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
           RVALEACVQARNEGRDLA EGNEIIREA KWSPELAAACEVWKEI F F  +D L
Sbjct: 421 RVALEACVQARNEGRDLAVEGNEIIREACKWSPELAAACEVWKEITFNFPTIDKL 475


>AT2G07732.1 | Symbols:  | ribulose-bisphosphate carboxylase |
           chr2:3468424-3468774 REVERSE
          Length = 116

 Score =  205 bits (522), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/103 (94%), Positives = 98/103 (95%)

Query: 180 LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHY 239
             AKNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFCAEA+YKAQAETG IKGHY
Sbjct: 12  FGAKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHY 71

Query: 240 LNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAH 282
           LNAT GTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAH
Sbjct: 72  LNATPGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAH 114


>ATMG00280.1 | Symbols: ORF110A | hypothetical protein |
           chrM:77819-78151 REVERSE
          Length = 110

 Score =  185 bits (469), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/94 (92%), Positives = 88/94 (93%)

Query: 180 LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHY 239
             AKNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFCAEA+YKAQAETG IKGHY
Sbjct: 12  FGAKNYGRAVYECLRGGLYFTKDDENVNSQPFMRWRDRFLFCAEAVYKAQAETGGIKGHY 71

Query: 240 LNATAGTCEEMIKRAVFARELGVPIVMHDYLTGG 273
           LNATAGTCEEMIKRAVFARELGVPIVMHDYL  G
Sbjct: 72  LNATAGTCEEMIKRAVFARELGVPIVMHDYLNRG 105