Jatropha Genome Database
- JcCA0000182.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0000182.20 + phase: 2 /TE
(660 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Symbols: | RNase H domain-containing protein | ch... 62 1e-09
AT3G01410.1 | Symbols: | RNase H domain-containing protein | ch... 62 1e-09
AT1G24090.1 | Symbols: | RNase H domain-containing protein | ch... 54 3e-07
AT5G51080.2 | Symbols: | RNase H domain-containing protein | ch... 51 3e-06
AT5G51080.1 | Symbols: | RNase H domain-containing protein | ch... 51 3e-06
AT5G51080.3 | Symbols: | RNase H domain-containing protein | ch... 50 4e-06
>AT3G01410.2 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 80 NRAWKLYFDGSA--NRNGAGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEAL 137
N + + FDG++ N AGA V+ A + V + + TNN+AEY A ++G+ +
Sbjct: 152 NDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211
Query: 138 LASGAKEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNR 197
L G K V V+GDS+LV WK ++ + + F HI R N
Sbjct: 212 LDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNS 271
Query: 198 IPNALANLA 206
+ AN A
Sbjct: 272 EADKQANSA 280
>AT3G01410.1 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 294
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 80 NRAWKLYFDGSA--NRNGAGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEAL 137
N + + FDG++ N AGA V+ A + V + + TNN+AEY A ++G+ +
Sbjct: 152 NDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211
Query: 138 LASGAKEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNR 197
L G K V V+GDS+LV WK ++ + + F HI R N
Sbjct: 212 LDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNS 271
Query: 198 IPNALANLA 206
+ AN A
Sbjct: 272 EADKQANSA 280
>AT1G24090.1 | Symbols: | RNase H domain-containing protein |
chr1:8520834-8524690 FORWARD
Length = 535
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 87 FDGSANRNG--AGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGAKE 144
FDG++ N +GA+ V++ +G + ++ L TNN AEY A I+G++ + G K
Sbjct: 221 FDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKN 280
Query: 145 VEVIGDSLLVIEHANE---RWKVEEE---RLKPYVEYLLKKAALFDKITFTHIGRIHNRI 198
++V GDS LV + +WKV E +L + L K F+ +H+ R N
Sbjct: 281 IKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFE---ISHVLRNLNAD 337
Query: 199 PNALANLA 206
+ ANLA
Sbjct: 338 ADEQANLA 345
>AT5G51080.2 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 87 FDGSANRNG--AGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGAKE 144
FDG++ N +GA+ V++ +G + ++ L TNN AEY I+G++ + G +
Sbjct: 190 FDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTK 249
Query: 145 VEVIGDSLLVIEHANERWKVEEE---RLKPYVEYLLKKAALFDKITFTHIGRIHNRIPNA 201
++V DS LV +WKV E +L + L K F+ +H+ R N +
Sbjct: 250 IKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFE---ISHVLRSLNSDADE 306
Query: 202 LANLAS 207
AN+A+
Sbjct: 307 QANMAA 312
>AT5G51080.1 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 322
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 87 FDGSANRNG--AGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGAKE 144
FDG++ N +GA+ V++ +G + ++ L TNN AEY I+G++ + G +
Sbjct: 190 FDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTK 249
Query: 145 VEVIGDSLLVIEHANERWKVEEE---RLKPYVEYLLKKAALFDKITFTHIGRIHNRIPNA 201
++V DS LV +WKV E +L + L K F+ +H+ R N +
Sbjct: 250 IKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFE---ISHVLRSLNSDADE 306
Query: 202 LANLAS 207
AN+A+
Sbjct: 307 QANMAA 312
>AT5G51080.3 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770486 REVERSE
Length = 259
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 87 FDGSANRNG--AGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGAKE 144
FDG++ N +GA+ V++ +G + ++ L TNN AEY I+G++ + G +
Sbjct: 127 FDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYTK 186
Query: 145 VEVIGDSLLVIEHANERWKVEEE---RLKPYVEYLLKKAALFDKITFTHIGRIHNRIPNA 201
++V DS LV +WKV E +L + L K F+ +H+ R N +
Sbjct: 187 IKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFE---ISHVLRSLNSDADE 243
Query: 202 LANLAS 207
AN+A+
Sbjct: 244 QANMAA 249