Jatropha Genome Database

JcCA0000051.40

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000051.40 - phase: 0 /partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal ...   277   2e-75
ATCG00830.1 | Symbols: RPL2.1 | encodes a chloroplast ribosomal ...   277   2e-75
AT2G44065.2 | Symbols:  | ribosomal protein L2 family protein | ...   113   6e-26
AT2G44065.1 | Symbols:  | ribosomal protein L2 family protein | ...   113   6e-26
AT3G51190.1 | Symbols:  | structural constituent of ribosome | c...    85   3e-17
AT4G36130.1 | Symbols:  | 60S ribosomal protein L8 (RPL8C) | chr...    78   2e-15
AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo defective 2296)...    76   9e-15

>ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal
           protein L2, a constituent of the large subunit of the
           ribosomal complex | chrC:152806-154312 FORWARD
          Length = 274

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 143/156 (91%)

Query: 21  EVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 80
           EV I        TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGE 178

Query: 81  VRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 140
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 179 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 238

Query: 141 IGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTK 176
           IGRKKP TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct: 239 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274


>ATCG00830.1 | Symbols: RPL2.1 | encodes a chloroplast ribosomal
           protein L2, a constituent of the large subunit of the
           ribosomal complex | chrC:84337-85843 REVERSE
          Length = 274

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 143/156 (91%)

Query: 21  EVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 80
           EV I        TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGE 178

Query: 81  VRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 140
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 179 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 238

Query: 141 IGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTK 176
           IGRKKP TPWGYPALGRR+RKR KYS+ LILRRR+K
Sbjct: 239 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274


>AT2G44065.2 | Symbols:  | ribosomal protein L2 family protein |
           chr2:18228860-18230368 FORWARD
          Length = 214

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 20  EEVLIDQKEESTSTDMPLG-----TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL 74
           EE+L         + MPLG     T IHNIE+  G+G ++ RAAG  AK++ +  K   L
Sbjct: 48  EEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCL 107

Query: 75  -KLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 133
            KLPSG+ + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHG
Sbjct: 108 IKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHG 167

Query: 134 GGEGRAPIGRKK---PATPWGYPALG 156
           GGEG++     +     +PWG P  G
Sbjct: 168 GGEGKSKSSGSRGRTSVSPWGKPCKG 193


>AT2G44065.1 | Symbols:  | ribosomal protein L2 family protein |
           chr2:18228860-18230368 FORWARD
          Length = 214

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 20  EEVLIDQKEESTSTDMPLG-----TAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL 74
           EE+L         + MPLG     T IHNIE+  G+G ++ RAAG  AK++ +  K   L
Sbjct: 48  EEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCL 107

Query: 75  -KLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG 133
            KLPSG+ + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHG
Sbjct: 108 IKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHG 167

Query: 134 GGEGRAPIGRKK---PATPWGYPALG 156
           GGEG++     +     +PWG P  G
Sbjct: 168 GGEGKSKSSGSRGRTSVSPWGKPCKG 193


>AT3G51190.1 | Symbols:  | structural constituent of ribosome |
           chr3:19016606-19017547 REVERSE
          Length = 260

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 66/114 (57%), Gaps = 15/114 (13%)

Query: 34  DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSAT 91
            +P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A 
Sbjct: 107 SIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAM 166

Query: 92  VGQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           +GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG 
Sbjct: 167 IGQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGN 216


>AT4G36130.1 | Symbols:  | 60S ribosomal protein L8 (RPL8C) |
           chr4:17097613-17098656 FORWARD
          Length = 258

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 15/113 (13%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 92
           +P G  I N+E  +G  G  ARA+G  A +IA   +  ++ +KLPSG  +++   C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMI 166

Query: 93  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215


>AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo defective 2296);
           structural constituent of ribosome |
           chr2:7837151-7838160 FORWARD
          Length = 258

 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 7/109 (6%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 92
           +P G  + N+E  +G  G LARA+G  A +IA    S T  +KLPSG  +++   C A +
Sbjct: 107 IPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMI 166

Query: 93  GQVGNTGVNQKSLGRAGSKC--WLGKR---PVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+    +  KR   P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGN 215