Jatropha Genome Database

JcCA0000041.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.60 + phase: 0 /partial
         (188 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00530.1 | Symbols: YCF10 | hypothetical protein | chrC:60741...   286   4e-78

>ATCG00530.1 | Symbols: YCF10 | hypothetical protein |
           chrC:60741-61430 FORWARD
          Length = 229

 Score =  286 bits (733), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/186 (77%), Positives = 156/186 (83%), Gaps = 3/186 (1%)

Query: 2   KRKAFIPLLYLTSIVFLPWWISFFSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEK 61
           K+KAFIP  Y  SIVFLPW IS      NKS ++W+ NW NT + ETFLNDIQEKS LEK
Sbjct: 3   KKKAFIPFFYFLSIVFLPWLISLCC---NKSLKTWITNWWNTRQCETFLNDIQEKSFLEK 59

Query: 62  FIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVI 121
           FI+LEEL +LDEMIKEYPET+LQ FR GIHKETIQ IK+HNE  IHTILHFSTN+I FVI
Sbjct: 60  FIQLEELFQLDEMIKEYPETNLQQFRLGIHKETIQFIKIHNEYNIHTILHFSTNLISFVI 119

Query: 122 LSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGSVYK 181
           LSGYS    E+L ILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIG +YK
Sbjct: 120 LSGYSFWGKEKLFILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPHGWELMIGYIYK 179

Query: 182 DFGFAH 187
           DFGFAH
Sbjct: 180 DFGFAH 185