Jatropha Genome Database

JcCA0000041.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.50 + phase: 0 
         (184 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00520.1 | Symbols: YCF4 | Encodes a protein required for pho...   295   1e-80

>ATCG00520.1 | Symbols: YCF4 | Encodes a protein required for
           photosystem I assembly and stability. In cyanobacteria,
           loss of function mutation in this gene increases
           PSII/PSI ratio without any influence on photoautotrophic
           growth. | chrC:59772-60326 FORWARD
          Length = 184

 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 153/184 (83%)

Query: 1   MSWRSERIWIELIAGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGKNLISLFPSQQIIFF 60
           MSWRSE IWIE I GSRKTSNFCWA                 YLG+N+ISLFPSQQIIFF
Sbjct: 1   MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFF 60

Query: 61  PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRF 120
           PQGIVMSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGIV IFRWGFPGK+RRI LRF
Sbjct: 61  PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 120

Query: 121 LMKDIQSIRLEVKEGIYARRALYMEIRGRGAIPLTRTDENLTPREIEQKVAELAYFLRVP 180
            MKDIQSIR+EVKEG+ ARR LYMEIRG+GAIPL RTDEN T REIEQK AELAYFLRVP
Sbjct: 121 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 180

Query: 181 IEVF 184
           IEVF
Sbjct: 181 IEVF 184