Jatropha Genome Database

JcCA0000041.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.40 + phase: 0 /short
         (37 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00510.1 | Symbols: PSAI | Encodes subunit I of photosystem I...    65   9e-12

>ATCG00510.1 | Symbols: PSAI | Encodes subunit I of photosystem I.
          | chrC:59247-59360 FORWARD
          Length = 37

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/36 (88%), Positives = 33/36 (91%)

Query: 1  MTILNNLPSIFVPLVGLVFPAIAMASLSLHVQKNKI 36
          MT  NNLPSIFVPLVGLVFPAIAMASL LH+QKNKI
Sbjct: 1  MTTFNNLPSIFVPLVGLVFPAIAMASLFLHIQKNKI 36