Jatropha Genome Database

JcCA0000041.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.30 + phase: 0 
         (493 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00500.1 | Symbols: ACCD | Encodes the carboxytransferase bet...   591   e-169

>ATCG00500.1 | Symbols: ACCD | Encodes the carboxytransferase beta
           subunit of the Acetyl-CoA carboxylase (ACCase) complex
           in plastids. This complex catalyzes the carboxylation of
           acetyl-CoA to produce malonyl-CoA, the first committed
           step in fatty acid synthesis. | chrC:57075-58541 FORWARD
          Length = 488

 Score =  591 bits (1523), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/491 (62%), Positives = 350/491 (71%), Gaps = 11/491 (2%)

Query: 1   MEKRWFNSILSNVELGYRCRLSKSMDSFSPLENTSISEDPILNDTDKNTHCW---XXXXX 57
           MEK WFN + S  EL YR  LSK+MDSF+P E T+IS+D  + D DKN + W        
Sbjct: 1   MEKSWFNFMFSKGELEYRGELSKAMDSFAPGEKTTISQDRFIYDMDKNFYGWDERSSYSS 60

Query: 58  XXXXXVDHLVG---IRNFSVDETFLVRDSNRDSYSIYFDIENQVFEIETDHSFLNELEXX 114
                VD LV    IRNF  D+TF VRDSN++SYSI+FD + ++FEI+ D S L +    
Sbjct: 61  SYSNNVDLLVSSKDIRNFISDDTFFVRDSNKNSYSIFFDKKKKIFEIDNDFSDLEKF--F 118

Query: 115 XXXXXXXXXXXXXXXXGDFHYDHYMSDTKYSWNNYINSCIDNYLRSQICIDLXXXXXXXX 174
                            D HYD Y+ DTKY+  N+INSCID+Y RS ICID         
Sbjct: 119 YSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSCIDSYFRSYICIDNNFLIDSNN 178

Query: 175 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTIRESSNDLDITQKYKHLWVQCENCYGLN 234
                                        + +   SS D DITQ Y  LW+QC+NCYGL 
Sbjct: 179 FNESYIYNFICSESGKIRESKNYKIRTNRNRSNLISSKDFDITQNYNQLWIQCDNCYGLM 238

Query: 235 YKKFLKSRMNICEQCGYHLKMSSSDRIELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYKD 294
           YKK    +MN+CEQCG++LKMSSS+RIELSID GTWNPMDEDMVS DPI+FHS+EEPYK+
Sbjct: 239 YKKV---KMNVCEQCGHYLKMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKN 295

Query: 295 RIDSYQKKTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEYATNKF 354
           RIDS QK TGLT+AVQTGTGQLNGIPVA+GVMDF+FMGGSMGSVVGEKITRLIEYATN+ 
Sbjct: 296 RIDSAQKTTGLTDAVQTGTGQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQC 355

Query: 355 LPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYVSILTSPTTGGVTASFGM 414
           LPLILVC+SGGARMQEGSLSLMQMAKISS L DYQS+KKLFY+SILTSPTTGGVTASFGM
Sbjct: 356 LPLILVCSSGGARMQEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGM 415

Query: 415 LGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQSAEFLFHKGLFDPIVPRNPLKGVLNE 474
           LGDIIIAEP AYIAFAGKRVIEQTL K VPEGSQ+AE L  KGL D IVPRN LKGVL+E
Sbjct: 416 LGDIIIAEPYAYIAFAGKRVIEQTLKKAVPEGSQAAESLLRKGLLDAIVPRNLLKGVLSE 475

Query: 475 LLQLHDFFPLN 485
           L QLH FFPLN
Sbjct: 476 LFQLHAFFPLN 486