Jatropha Genome Database

JcCA0000041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.10 + phase: 0 /partial
         (167 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00490.1 | Symbols: RBCL | large subunit of RUBISCO. Protein ...   320   2e-88

>ATCG00490.1 | Symbols: RBCL | large subunit of RUBISCO. Protein is
           tyrosine-phosphorylated and its phosphorylation state is
           modulated in response to ABA in Arabidopsis thaliana
           seeds. | chrC:54958-56397 FORWARD
          Length = 479

 Score =  320 bits (821), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/167 (91%), Positives = 159/167 (95%)

Query: 1   MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
           MHFRVLAKALRLSGGDHIHAGTVVGKLEG+R+ TLGFVDLLRDD++EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYVEKDRSRGIFFTQDW 368

Query: 61  VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
           VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           QARNEGRDLA EGNEIIREA KWSPELAAACEVWKEI F F  +D L
Sbjct: 429 QARNEGRDLAVEGNEIIREACKWSPELAAACEVWKEITFNFPTIDKL 475