Jatropha Genome Database
- JcCA0000015.50
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0000015.50 - phase: 0 /TE
(957 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Symbols: | reverse transcriptase, putative / RNA-... 181 3e-45
AT3G09510.1 | Symbols: | nucleic acid binding | chr3:2921804-29... 118 2e-26
AT2G02650.1 | Symbols: | reverse transcriptase-related | chr2:7... 87 4e-17
ATMG00310.1 | Symbols: ORF154 | hypothetical protein | chrM:9088... 87 5e-17
ATMG01250.1 | Symbols: ORF102 | hypothetical protein | chrM:3105... 80 6e-15
AT3G25270.1 | Symbols: | nucleic acid binding | chr3:9203934-92... 62 2e-09
AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 62 2e-09
AT2G34320.1 | Symbols: | nucleic acid binding | chr2:14484959-1... 56 1e-07
AT4G09775.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 52 1e-06
AT1G10000.1 | Symbols: | nucleic acid binding / ribonuclease H ... 52 2e-06
>AT4G29090.1 | Symbols: | reverse transcriptase, putative /
RNA-dependent DNA polymerase, putative |
chr4:14333528-14335255 FORWARD
Length = 575
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 147/555 (26%), Positives = 253/555 (45%), Gaps = 34/555 (6%)
Query: 429 AIPSFCMSSFLISVSILVELQRLMNSYWWGGK-----MRWLSWERLCVAKEEXGLGFRHL 483
A+P++ M+ FL+ ++ ++ ++ +WW K M W +W+ L K E G+GF+ +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 484 RSFNLALLGKRYWRFLHNTNSLXXXXXXXXXXPSRNFLSAGVGRDPSFVWRGICAAKDAI 543
+FNLALLGK+ WR L SL + L+A +G PSFVW+ I A+++ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 544 CSGFRWRIEDGQSINVWTKPWL-LRDNEFWVHLPILPGFEH------IRVSDLILTHGAR 596
G R + +G+ I +W WL + + + +P E+ ++VSDLI G R
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG-R 180
Query: 597 AWNLPLIHGLFNPSIVEIITSIPLATNVQDDILIWHWTDSGIYSMKSGHRIVASLY---- 652
W +I LF ++I + D W +T SG Y++KSG+ ++ +
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 653 --VDIEDAWRSSFWKALWSMKIPPKVRHFLWRCCRDILLVKATLARMGLELDTGCDYYGT 710
++ + + ++ +W + PK++HFLW+C + L V LA L ++ C +
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 711 -TETLVRALVECPRVSFCWQLFGIQLTIGNF---STFLQL-----LEHLHKVWENAFFEN 761
ET+ L +C W + I + +G S ++ L L + + WE A +
Sbjct: 301 CKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKA-SQL 359
Query: 762 FVMGLWSVWLSSNELKWNQVEEGPYQVVTRAKSMLTSWK-KAQRKSPGSGTGTGDPAGSQ 820
LW +W + NEL + E +V+ RA+ L W+ + + +S G+ + +
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 821 WFSPPVGTFKINFDATLLSSVGHGAVAAIISNCNSGFVSAATSSLQGCSSPAVAEAQALR 880
W PP K N DAT + ++ N +L S AE +A+R
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 881 -TVLSWLLSGYSNLKIQIETDCLQVYCAMRNSVQDWSEFGVVISECKLLLVQLPNVTLAW 939
VLS LS + + E+D QV + N+ + W I + + LL Q V +
Sbjct: 480 WAVLS--LSRFQYNYVIFESDS-QVLIEILNNDEIWPSLKPTIQDLQRLLSQFTEVKFVF 536
Query: 940 IRRQANDIAYVLAKS 954
I R+ N +A +A+
Sbjct: 537 IPREGNTLAERVARE 551
>AT3G09510.1 | Symbols: | nucleic acid binding |
chr3:2921804-2923258 FORWARD
Length = 484
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 193/462 (41%), Gaps = 46/462 (9%)
Query: 521 LSAGVGRDPSFVWRGICAAKDAICSGFRWRIEDGQSINVWTKPWLLRDNEFWVHLP---- 576
L A V + S+ W + + G R I DGQ+I + DN H P
Sbjct: 12 LDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGL------DNIVDSHPPRPLN 65
Query: 577 ILPGFEHIRVSDLILTHGARA-WNLPLIHGLFNPSIVEIITSIPLATNVQDDILIWHWTD 635
++ + +++L G+ W+ I + S I I LA + + D +IW++
Sbjct: 66 TEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNT 125
Query: 636 SGIYSMKSGHRIVA---SLYVDIEDAWRSS--FWKALWSMKIPPKVRHFLWRCCRDILLV 690
+G Y+++SG+ ++ S + + S +W++ I PK++HFLWR L
Sbjct: 126 TGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALAT 185
Query: 691 KATLARMGLELDTGCDY-YGTTETLVRALVECPRVSFCWQLFGIQL------------TI 737
L G+ +D C + E++ AL CP + W+L L I
Sbjct: 186 TERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENI 245
Query: 738 GNFSTFLQ--LLEHLHKVWENAFFENFVMGLWSVWLSSNELKWNQVEEGPYQVVTRAKSM 795
N F+Q + HK+ V +W +W + N + +N+ E P + V AK+
Sbjct: 246 SNILNFVQDTTMSDFHKLLP-------VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAE 298
Query: 796 LTSWKKAQRKSPGSGTGTGDPAGS--QWFSPPVGTFKINFDATLLSSVGHGAVAAIISNC 853
W A + + + T A + +W +PP K NFDA II N
Sbjct: 299 THDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNH 358
Query: 854 NSGFVSAATSSLQGCSSPAVAEAQALRTVL--SWLLSGYSNLKIQIETDCLQVYCAMRNS 911
+S + L S+P AE +AL L +W + GY+ ++ +E DC Q + N
Sbjct: 359 YGTPISWGSMKLAHTSNPLEAETKALLAALQQTW-IRGYT--QVFMEGDC-QTLINLING 414
Query: 912 VQDWSEFGVVISECKLLLVQLPNVTLAWIRRQANDIAYVLAK 953
+ S + + + ++ +IRR+ N +A+VLAK
Sbjct: 415 ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAK 456
>AT2G02650.1 | Symbols: | reverse transcriptase-related |
chr2:735411-736546 FORWARD
Length = 365
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 117/308 (37%), Gaps = 21/308 (6%)
Query: 665 KALWSMKIPPKVRHFLWRCCRDILLVKATLARMGLELDTGCDYYG-TTETLVRALVECPR 723
+A+W + + PK++HFLWRC L L ++ D C ET+ + CP
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 724 VSFCWQLFGIQLTIGN-------FSTFLQLLEHLHKVWENAFFENFVMG--LWSVWLSSN 774
W+ + IGN F L L L K + F+ +W +W S N
Sbjct: 95 TQSVWR--SANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRN 152
Query: 775 ELKWNQVEEGPYQVVTRAKSMLTSWKKAQRKSPGSGTG-------TGDPAGSQWFSPPVG 827
+ Q + P + T W A + + T SQW PP G
Sbjct: 153 VFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEG 212
Query: 828 TFKINFDATLLSSVGHGAVAAIISNCNSGFVSAATSSLQGCSSPAVAEAQALRTVLSWLL 887
K NFD+ + I CN V + LQ + AEA L ++
Sbjct: 213 WVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQ-VI 271
Query: 888 SGYSNLKIQIETDCLQVYCAMRNSVQDWSEFGVVISECKLLLVQLPNVTLAWIRRQANDI 947
+ + E+D + + N +D S G +I + + +++LP +L ++ R+ N
Sbjct: 272 WAHGLRYVWFESDSKSLVTLINNG-EDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSA 330
Query: 948 AYVLAKSV 955
A LA V
Sbjct: 331 ADALASHV 338
>ATMG00310.1 | Symbols: ORF154 | hypothetical protein |
chrM:90883-91347 REVERSE
Length = 154
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 429 AIPSFCMSSFLISVSILVELQRLMNSYWWGG-----KMRWLSWERLCVAKEEXG-LGFRH 482
A+P + MS F +S + +L M +WW K+ W++W++LC +KE+ G LGFR
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 483 LRSFNLALLGKRYWRFLHNTNSLXXXXXXXXXXPSRNFLSAGVGRDPSFVWRGICAAKDA 542
L FN ALL K+ +R +H ++L P + + VG PS+ WR I ++
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 543 ICSGFRWRIEDGQSINVWTKPWLLRDN 569
+ G I DG VW W++ +
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDET 148
>ATMG01250.1 | Symbols: ORF102 | hypothetical protein |
chrM:310514-310882 FORWARD
Length = 122
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 249 VNGDEVGPIIPERGLRQGCPLSPYLFILCAEGLSKLFSKSKHEGRLKGCRVSRAAPQLSN 308
+NG G + P RGLRQG PLSPYLFILC E LS L +++ +GRL G RVS +P++++
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 309 LLFADGSLFFFEASWTQ-ALEMKNI-LVTYEAASGQAVNRQKSDIFF 353
LLFAD + A W A ++ I ++ G VN S+++F
Sbjct: 74 LLFADDT---SSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYF 117
>AT3G25270.1 | Symbols: | nucleic acid binding |
chr3:9203934-9204965 REVERSE
Length = 343
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 111/304 (36%), Gaps = 22/304 (7%)
Query: 667 LWSMKIPPKVRHFLWRCCRDILLVKATLARMGLELDTGCDY-YGTTETLVRALVECPRVS 725
+W +K PK++HFLW+ L L R + C ET +C
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 726 FCWQLFGI-----QLTIGNFSTFLQLLEHLHKVWEN---AFFENFVMGLWSVWLSSNELK 777
W+ GI + T T ++LL L N F + LW +W S N+L
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELL--LSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135
Query: 778 WNQVEEGPYQVVTRAKSMLTSWKKA-------QRKSPGSGTGTGDPAGSQWFSPPVGTFK 830
+ Q + RA++ + W+ ++ S A ++W PP K
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195
Query: 831 INFDATLLSSVGHGAVAAIISNCNSGFVSAATSSLQGCSSPAVAEAQALRTVLSWLLS-G 889
N+D + ++ + N ++ + + S +E QAL + S G
Sbjct: 196 YNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQG 255
Query: 890 YSNLKIQIETDCLQVYCAMRNSVQDWSEFGVVISECKLLLVQLPNVTLAWIRRQANDIAY 949
Y K+ E D QV M N ++ F I E + + W+ R N A
Sbjct: 256 YR--KVIFEGDSKQVEELMNNEKLNFGRFN-WIREGRFWQKRFEEAVFKWVPRTNNQPAD 312
Query: 950 VLAK 953
+LAK
Sbjct: 313 ILAK 316
>AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G23910.1);
Has 2302 Blast hits to 2235 proteins in 74 species:
Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12;
Plants - 1295; Viruses - 0; Other Eukaryotes - 105
(source: NCBI BLink). | chr3:8789471-8793208 FORWARD
Length = 746
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 35/192 (18%)
Query: 379 RYLGLPSLIGRERRHIFSFLKDXVRKLVSGWNQKLLSKAGKEVLIKAVAQAIPSFCMSSF 438
RYLGLP L + + L + +R + W + LS AG+ LI +V ++ +F MS+F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 439 LISVSILVELQRLMNSYWWGG-----KMRWLSWERLCVAKEEXGLGFRHLRSFNLALLGK 493
+ + + E+ + +S+ W G K ++W +C K+E GLG R L+ N
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG---- 141
Query: 494 RYWRFLHNTNSLXXXXXXXXXXPSRNFLSAGVGRDPSFVWRGICAAKDAICSGF-RWRIE 552
+W NT +G S++W+ I + A+ SGF + I
Sbjct: 142 SFWSISGNTT---------------------LG---SWMWKKILKHR-ALASGFVKHDIH 176
Query: 553 DGQSINVWTKPW 564
+G + + W W
Sbjct: 177 NGSNTSFWFDNW 188
>AT2G34320.1 | Symbols: | nucleic acid binding |
chr2:14484959-14485837 FORWARD
Length = 292
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 5/191 (2%)
Query: 766 LWSVWLSSNELKWNQVEEGPYQVVTRAKSMLTSWK-KAQRKSPGSGTGTGDPAGSQWFSP 824
LW +W S NEL + E +V+ RA W + + + SG QW +P
Sbjct: 81 LWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAP 140
Query: 825 PVGTFKINFDATLLSSVGHGAVAAIISNCNSGFVSAATSSLQGCSSPAVAEAQALR-TVL 883
P K N DAT + I+ N + G + +L + AE +ALR VL
Sbjct: 141 PYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVL 200
Query: 884 SWLLSGYSNLKIQIETDCLQVYCAMRNSVQDWSEFGVVISECKLLLVQLPNVTLAWIRRQ 943
+ +S ++ +I E+D Q + NS W + + + LL V + R
Sbjct: 201 T--MSRFNYKRIIFESDA-QALVNLLNSDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRG 257
Query: 944 ANDIAYVLAKS 954
N +A +A+
Sbjct: 258 GNKVADRIARE 268
>AT4G09775.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: reverse transcriptase-related (TAIR:AT2G02650.1);
Has 113 Blast hits to 113 proteins in 4 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:6156629-6157054 FORWARD
Length = 141
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 766 LWSVWLSSNELKWNQVEEGPYQVVTRAKSMLTSWKKAQRKSPGSGTGTGDP------AGS 819
+W +W S NE + Q++ P++V + + T W + + T P
Sbjct: 1 MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQPNDRPSGRSK 60
Query: 820 QWFSPPVGTFKINFDATLLSSVGHGAVAAIISNCNSGFVSAATSSLQGCSSPAVAEA 876
+W PP G K NFD+ + + + II + N + + + LQ S AEA
Sbjct: 61 EWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 117
>AT1G10000.1 | Symbols: | nucleic acid binding / ribonuclease H |
chr1:3263877-3264788 REVERSE
Length = 303
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 115/303 (37%), Gaps = 35/303 (11%)
Query: 674 PKVRHFLWRCCRDILLVKATLARMGLELDTGCDYYGTTETLVRALVECPRVSFCWQLFGI 733
PK++ FLW+ L V A L R + C G ET L C + W L +
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 734 QLTIGNFSTFLQLLEHLHKVWENAFFEN--------FVMGLWSVWLSSNELKWNQVEEGP 785
QL G+ +LE L+ + + F W +W + N+L +
Sbjct: 62 QL--GHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 119
Query: 786 YQVVTRAKSMLTSWKKAQRKSPGSGTGTGDPAGSQWFSPPVGTFKINFDATLLSSVGHGA 845
+ VT+A +W+ AQ P T P + + F DA
Sbjct: 120 IETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLT---HDFLCYVDAAWQQQS---- 172
Query: 846 VAAIISNCNSGFVSAATSSLQ--------GC---SSPAVAEAQALRTVLSWLLSGYSNLK 894
S SG+V ATS + GC SP AEA A+++ + L
Sbjct: 173 -----SLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQ-LERSD 226
Query: 895 IQIETDCLQVYCAMRNSVQDWSEFGVVISECKLLLVQLPNVTLAWIRRQANDIAYVLAKS 954
+ + +D + A+ ++V FG+++ E + + + +++ +I R N IA AK
Sbjct: 227 LLVLSDSKSIVDALNSNVSLNEIFGLLV-EIRSIRNRFRSISFQFIPRLVNSIADAAAKL 285
Query: 955 VPC 957
C
Sbjct: 286 SLC 288