Jatropha Genome Database

JHL02J17r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JHL02J17r.10 + phase: 2 /partial/short
         (40 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...    47   3e-06

>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/27 (74%), Positives = 26/27 (96%)

Query: 1   SSKVSEAIRSRCLNMRINAPSEEQVRK 27
           SSKV+EAI+SRCLN+RINAPS+E++ K
Sbjct: 170 SSKVTEAIKSRCLNVRINAPSQEEIVK 196