Jatropha Genome Database

JcSR397681f.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR397681f.10 - phase: 1 /partial
         (122 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g140300.1 Acyl-CoA oxidase, C-terminal chr04_pseudomo...    69   6e-13
IMGA|Medtr8g105410.1 Acyl-CoA dehydrogenase C-terminal-like; chr...    47   2e-06

>IMGA|Medtr4g140300.1 Acyl-CoA oxidase, C-terminal
           chr04_pseudomolecule_IMGAG_V3 34359311-34357650 E
           EGN_Mt090430 20090702
          Length = 144

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 85  LVCDLYALDRIWNDIGTYRNVDYVAPNKAK 114
           LVCDLYALDRIWNDIGTYRNVDYVAPNKAK
Sbjct: 63  LVCDLYALDRIWNDIGTYRNVDYVAPNKAK 92


>IMGA|Medtr8g105410.1 Acyl-CoA dehydrogenase C-terminal-like;
           chr08_pseudomolecule_IMGAG_V3 23279785-23286851 E
           EGN_Mt090430 20090702
          Length = 664

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 1   EGEDHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKSLGSFGAWNRCLNHLLTLAESHVE 60
           + ED L +P   L AF  R +R+  + A  L K S     F      L  L+  A +H +
Sbjct: 473 KAEDWL-NPNTVLRAFEARAARMSVACAKNLTKFSNPEEGF---QELLADLVDAARAHCQ 528

Query: 61  SVILAKFIEAVQ-NCPDASSRAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAKV 115
            ++++KFIE +Q + P    +  L+++C++YAL  +   +G + +   + P +  +
Sbjct: 529 LIVVSKFIEKLQQDIPGKGVKRQLEILCNIYALFHLHKHLGDFLSTGCITPKQGSL 584