Jatropha Genome Database

JcSR152930r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR152930r.10 + phase: 2 /TE/partial
         (124 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H...    72   8e-14
IMGA|Medtr7g041090.1 Polynucleotidyl transferase, Ribonuclease H...    64   3e-11
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc...    60   2e-10
IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H...    55   7e-09
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H...    51   1e-07
IMGA|Medtr1g117590.1 Polynucleotidyl transferase, Ribonuclease H...    50   2e-07
IMGA|Medtr5g079690.1 Polynucleotidyl transferase, Ribonuclease H...    50   2e-07
IMGA|Medtr3g127630.1 Polynucleotidyl transferase, Ribonuclease H...    49   4e-07
IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H...    49   5e-07
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc...    48   1e-06
IMGA|Medtr8g037100.1 hypothetical protein chr08_pseudomolecule_I...    47   2e-06
IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H...    47   2e-06
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H...    47   2e-06
IMGA|Medtr3g142710.1 Glycoside hydrolase, family 16, active site...    45   7e-06

>IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 24592281-24593243 H
           EGN_Mt090430 20090702
          Length = 320

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           DHRG  IKA + +  G   P+ AE + +R+ + WL  L L    IE DC  +V+++   +
Sbjct: 193 DHRGQIIKAATNWYEGNPLPQEAEAVGLRDAILWLGELGLSDVHIELDCKIVVDSICDKN 252

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYFASFCVWDMIPDFI 119
            + +++  ++ +    + Q ++  I++V+R AN   H+LAR +   A   V+D+IP  I
Sbjct: 253 NNQAEFGNIIANCMSLLQQFTNFKISFVRRQANVVTHNLARVSILHARHRVFDLIPSCI 311


>IMGA|Medtr7g041090.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 10444456-10446587 H
           EGN_Mt090430 20090702
          Length = 182

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWL-RSLHLGLTIIETDCLQLVNAVQGG 59
           DH+G    A +   +   SP +AET+A+R  L W+  S H G  IIETD    V  +QG 
Sbjct: 39  DHKGDVNFAATHSENIRTSPLLAETLALRCCLDWMISSNHPGFVIIETDSESTVKCLQG- 97

Query: 60  SLDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYFAS 108
            L+ ++  LV+ D  HF+    ++ +A++ R  N+ AH L   A   +S
Sbjct: 98  KLNVAELDLVISDCIHFLFLLPNVIVAFISRTKNKAAHGLVEVAVNLSS 146


>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
            transcriptase); Hemopexin; Polynucleotidyl transferase,
            Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
            27457173-27452820 H EGN_Mt090430 20090702
          Length = 1147

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 60/113 (53%)

Query: 1    DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
            D  G F+ A++       SP  +E   + + L W+ +L     I E+DC  LV+ V   +
Sbjct: 943  DSEGRFVGAMTNVLKASMSPAESEAWGLHQGLKWITTLGHQRVIFESDCKMLVDDVHSNN 1002

Query: 61   LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYFASFCVWD 113
            +++S++ L++ + +  +   ++  + + +R AN  AH+LA+ A   AS  ++D
Sbjct: 1003 VNHSEYGLIVKNCRSLLQIFNNHEVVFTRRQANGSAHALAKTALSHASHNIFD 1055


>IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr08_pseudomolecule_IMGAG_V3 14929440-14928565 H
           EGN_Mt090430 20090702
          Length = 241

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G+FI+A + +S+ +CS  V E + +   + W+  L L     E D  ++V+    G+
Sbjct: 113 DEGGNFIRAKTMWSNPVCSIDVGEAMGLSHAIQWVHELLLTNVDFELDAKKVVDYFNRGN 172

Query: 61  LDYSDWSLVLGDIKHFISQSSDIS-IAWVKRHANQPAHSLARAACYFASFCVWDMIP 116
            D +++  ++ + +   +   + S + + +R AN+ AH+LAR A + A+  ++++ P
Sbjct: 173 NDITEFGAIVEECRRSCNLYFENSKVEFSRRQANEVAHTLAREATFLANPHIFNVAP 229


>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
           EGN_Mt090430 20090702
          Length = 404

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G F++A + + + LCS  + E + +   + W+  L L     E D  ++ +    G+
Sbjct: 276 DEDGCFVRAKTMWHTPLCSVDIGEALGLHHTIRWVHELQLQNVNFEVDSKRVADYFNRGN 335

Query: 61  LDYSDWSLVLGDIKHFISQS-SDISIAWVKRHANQPAHSLARAACYFASF--------CV 111
            D + + +++   +H+ S    +  + + +R AN  AH LA+A+   +SF        C+
Sbjct: 336 GDITKFEVIMDSNRHYCSLYLPNSHVEFYRRQANGVAHELAKASLSESSFRIFYYILTCI 395

Query: 112 WDMI 115
            D+I
Sbjct: 396 NDLI 399


>IMGA|Medtr1g117590.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 25276151-25276918 H
           EGN_Mt090430 20090702
          Length = 235

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D   +F+ A     S +C   + E + +   L W+ +L LG    E D  ++V+     +
Sbjct: 107 DENDTFVLAKQVRFSPICEVHIGEALGLLAALDWMHNLSLGPVDFELDAKRVVDGFNSLN 166

Query: 61  LDYSDWSLVLGDIKHFISQ-SSDISIAWVKRHANQPAHSLARAACYFASFCVWDMIPDFI 119
            D +++  ++   K   S    +  + +V+R AN+ AH+LA+AA   AS  +   IP  I
Sbjct: 167 CDVTEFGNIIEHCKSLCSNFYVNSRVEFVRRQANEVAHNLAKAALLSASSQIVVEIPYCI 226

Query: 120 QY 121
           ++
Sbjct: 227 EH 228


>IMGA|Medtr5g079690.1 Polynucleotidyl transferase, Ribonuclease H
           fold, putative chr05_pseudomolecule_IMGAG_V3
           29745277-29749144 E EGN_Mt090430 20090702
          Length = 153

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G+F+ A + + + +C   V E + +   L WL +          DC ++V+ V    
Sbjct: 5   DDDGAFVLARTEWFAPICDIDVGEAVGLHTALDWLSNQKFDNVDFVLDCKKVVDCVNSSL 64

Query: 61  LDYSDWSLVLGDIKHFISQSSDIS-IAWVKRHANQPAHSLARAACYFASFCVWDMIPDFI 119
            D S++  ++   K  +  S   S + + +R AN+ AH LA+AA    S  V D IP  I
Sbjct: 65  EDSSEFGCIITACKQLLVDSFQNSHVEFSRRQANRVAHELAQAALSNPSPHVIDDIPTCI 124


>IMGA|Medtr3g127630.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 32416044-32415535 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D +G F+ A +   S LC   V E + +   L W+  LH        DC  +V       
Sbjct: 41  DDQGDFVMAKTDCFSPLCDVDVGEAVGLHTTLQWVADLHYDNVDFVLDCKSVVEHFNSNL 100

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIA-WVKRHANQPAHSLARAACYFASFCVWDMIPDFI 119
            D S+   ++   +     +   S A + +R AN  AH LAR A   AS  V+D +P  I
Sbjct: 101 GDSSELGCIIQACRKLFDCNFQNSHAEFNRRQANGVAHELARVAPSHASSHVYDDVPSCI 160

Query: 120 Q 120
           +
Sbjct: 161 R 161


>IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 24393992-24396620 H
           EGN_Mt090430 20090702
          Length = 287

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G F+  +S Y     +P  AE   + E +    +  +   I ++DC  +V+AV    
Sbjct: 160 DSMGHFLPGMSNYEFLRVTPSEAEATGLLEAVKLAIARGMQSVIFKSDCKIVVDAVNSSV 219

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAA 103
             +++   ++   K  +S  ++ S+ +V+R AN+ AH++ARA+
Sbjct: 220 NPHNELGDIIFYCKQLLSLHANFSVRFVRRQANKVAHNIARAS 262


>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
           15868030-15871357 E EGN_Mt090430 20090702
          Length = 845

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G+F+ A + + + +C   V E + +   L WL +          DC ++V+ V    
Sbjct: 709 DDDGAFVLARTEWFAPICDIDVGEAVGLHTALDWLSNQQFDNVDFVLDCKKVVDCVNSSL 768

Query: 61  LDYSDWSLVLGDIKH-FISQSSDISIAWVKRHANQPAHSLARAACYF--------ASFCV 111
            D S++  ++   K   + +  +  + + +R AN+ AH LA+A             S C+
Sbjct: 769 EDSSEFGCIITTCKQLLVDRFQNSHVEFSRRQANRVAHELAQAVLSNPSPHVIDDVSTCI 828

Query: 112 WDMIP 116
           W ++P
Sbjct: 829 WHILP 833


>IMGA|Medtr8g037100.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 7957038-7958530 H
           EGN_Mt090430 20090702
          Length = 410

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G F+ A +   S +C   V E + +   + W+  L LG    E D  ++V++     
Sbjct: 282 DENGHFVLARTDCFSPMCEVHVGEALGLLSAMDWVHLLQLGTVDFEMDAKRVVDSTNSSH 341

Query: 61  LDYSDWSLVLGDIKHFISQ-SSDISIAWVKRHANQPAH 97
            D +++  ++ + K   SQ   +  + +V+R AN+ AH
Sbjct: 342 TDATEYGNIISNCKTLFSQFYGNSCVEFVRRQANEVAH 379


>IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr04_pseudomolecule_IMGAG_V3
           8119740-8120808 H EGN_Mt090430 20090702
          Length = 303

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 4   GSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGSLDY 63
           G+ IKA + +S+ + +  V E + +   + W+  L L     E D  ++V+    GS D 
Sbjct: 178 GNLIKAKTMWSNPVFASDVGEALGLSNAIRWVHELQLLNINFELDAKKVVDYFNNGSNDI 237

Query: 64  SDWSLVLGDIK---HFISQSSDISIAWVKRHANQPAHSLARAACYFAS--------FCVW 112
           S++  ++ + +   +F   +S +  +  +R AN+ AH+LA+ A   AS        FC+ 
Sbjct: 238 SEFGSIVEECRRSHNFYFANSKVEFS--RRQANEVAHTLAQEATSLASPHNFNDVPFCIS 295

Query: 113 DMI 115
           ++I
Sbjct: 296 NLI 298


>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
           EGN_Mt090430 20090702
          Length = 612

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G+F+ A + + + +C     E + +   L WL +          DC ++V+ V    
Sbjct: 480 DDDGAFVLARTKWFAHICDIDAGEAVGLHTTLDWLSNQQFDNVDFVLDCKKVVDCVNSSL 539

Query: 61  LDYSDWSLVLGDIKH-FISQSSDISIAWVKRHANQPAHSLARAACYFASFCVWDMIPDFI 119
            D S++  ++   K   + +  +  + + +R AN+ AH LA+AA    S  V D IP  I
Sbjct: 540 EDSSEFGCIITACKQLLVDRFQNSHVEFSRRQANRVAHELAQAALSNPSPHVIDDIPKCI 599


>IMGA|Medtr3g142710.1 Glycoside hydrolase, family 16, active site
           chr03_pseudomolecule_IMGAG_V3 36647903-36647526 H
           EGN_Mt090430 20090702
          Length = 125

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 22  VAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGSLDYSDWSLVLGDIKHFISQ-S 80
           + E +     L W+    LG T  E D  ++V+       DY+++  ++ + K   S   
Sbjct: 18  IREMLGFLSALQWVHESRLGPTDFELDSEKVVDNFASDMQDYTEYGAIINECKSVFSHYY 77

Query: 81  SDISIAWVKRHANQPAHSLARAACYFASF 109
            + S+ +++R AN+  H LA+AA   ASF
Sbjct: 78  ENSSVEFLRRQANEVVHKLAKAALLSASF 106