Jatropha Genome Database

JcPR14IO7F0.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR14IO7F0.10 + phase: 2 /pseudo/partial/short
         (39 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g095540.1 Peptidase C19, ubiquitin carboxyl-terminal ...    53   4e-08

>IMGA|Medtr2g095540.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; UBA-like chr02_pseudomolecule_IMGAG_V3
           21847655-21841283 E EGN_Mt090430 20090702
          Length = 606

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 26/32 (81%)

Query: 1   YYMNQSLKTAFEMAPADPTVDLNMQL*VILHS 32
           YY+NQSLK AFE APADPTVDLNMQL  + H 
Sbjct: 107 YYINQSLKKAFEEAPADPTVDLNMQLTKLAHG 138