Jatropha Genome Database

JcPR11GR8GC.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR11GR8GC.10 - phase: 2 /pseudo/partial
         (171 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g073580.1 Transferase chr07_pseudomolecule_IMGAG_V3 1...    94   2e-20
IMGA|Medtr7g073510.1 Transferase chr07_pseudomolecule_IMGAG_V3 1...    92   1e-19
IMGA|Medtr4g125440.1 Transferase chr04_pseudomolecule_IMGAG_V3 2...    68   2e-12
IMGA|Medtr7g073540.1 Transferase chr07_pseudomolecule_IMGAG_V3 1...    49   9e-07
IMGA|Medtr3g030230.1 Transferase chr03_pseudomolecule_IMGAG_V3 8...    49   1e-06

>IMGA|Medtr7g073580.1 Transferase chr07_pseudomolecule_IMGAG_V3
           14966487-14967922 E EGN_Mt090430 20090702
          Length = 476

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 9/160 (5%)

Query: 3   SLIGKSISMFLTLRAYLCKQS-EIEKNPTLSPELTPFFDRTLIQDPSGLDMIFLNNWLES 61
           +L GKS +MF+   AYLC ++ E E+ PTL PEL P  DR +I+D +GL   F  NW E 
Sbjct: 170 ALDGKSSTMFIKAWAYLCNKTIETEELPTLLPELKPLLDREIIKD-NGLGDKFTKNWTEI 228

Query: 62  -RLLCVNDKP--RSLKLWQVPRDLSSLVRSTFELCHEDIKKLRRKVLSQLE--DQNKI-- 114
             ++  N+K   RSLK+      L   VRSTF+L  ED+ K+++ VLS+ E  D N++  
Sbjct: 229 ITMMFPNEKGNERSLKILPFEPKLEDYVRSTFKLTREDLNKIKQMVLSKWELLDTNELTS 288

Query: 115 KSMNLSTFVL*FAYTLVCIVKARMLERKTNIRFAV*QTVE 154
           K   LS+FVL  AY+LVC+ KA     K   +F    TV+
Sbjct: 289 KPPTLSSFVLTCAYSLVCLAKAIHGVEKEKEKFGFAFTVD 328


>IMGA|Medtr7g073510.1 Transferase chr07_pseudomolecule_IMGAG_V3
           14921806-14923447 E EGN_Mt090430 20090702
          Length = 478

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 11/157 (7%)

Query: 3   SLIGKSISMFLTLRAYLCKQ--SEIEKNPTLSPELTPFFDRTLIQDPSGLDMIFLNNWLE 60
            L GKS +MF+   AYLC +     E++PTL PEL P FDR +I+DP+ L + F N+W E
Sbjct: 169 GLDGKSSTMFMKAWAYLCHKIIETKEESPTLLPELEPLFDREVIKDPNELGVTFTNSWTE 228

Query: 61  ---SRLLCVNDKPRSLKLWQVPRDLSSLVRSTFELCHEDIKKLRRKVLSQLE----DQNK 113
              +          SL +      L   VR+TF L  ED+ K+++ VLS+ E    +++ 
Sbjct: 229 IISTIFPSEKGNEHSLNILHFEPKLEDSVRATFNLTREDLNKIKQMVLSKWEFYDTNESY 288

Query: 114 IKSMNLSTFVL*FAYTLVCIVKA--RMLERKTNIRFA 148
            K   LS+FVL  AY+LVC  KA  R    K    FA
Sbjct: 289 SKPQTLSSFVLTCAYSLVCYAKAIHRADMEKEKFSFA 325


>IMGA|Medtr4g125440.1 Transferase chr04_pseudomolecule_IMGAG_V3
           29588126-29589244 E EGN_Mt090430 20090702
          Length = 302

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 11  MFLTLRAYLCKQSEIEKNP-TLSPELTPFFDRTLIQDPSGLDMIFLNNWLESRLLCVNDK 69
           MF+   + +CK  E E     L P L PF +R LI+DP+  +  F+N W  +R+    DK
Sbjct: 1   MFIKAWSSICKSLEEETQSLNLEPLLEPFLERELIEDPNDFENSFINTW--NRISSHFDK 58

Query: 70  P--RSLKLWQVPRD--LSSLVRSTFELCHEDIKKLRRKVLSQ---LEDQNKIKSMN---- 118
              +S+K+        +   VR TFEL  ED++K+ ++V S+   +ED  + K       
Sbjct: 59  SSVKSIKIMSSMFQPIIKDAVRETFELTREDLEKINKRVFSKWNNIEDGAQEKEQEQPKK 118

Query: 119 LSTFVL*FAYTLVCIVKA 136
           LSTFVL  AY  VCI KA
Sbjct: 119 LSTFVLTCAYVSVCIAKA 136


>IMGA|Medtr7g073540.1 Transferase chr07_pseudomolecule_IMGAG_V3
           14928738-14930218 E EGN_Mt090430 20090702
          Length = 271

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 4   LIGKSISMFLTLRAYLCKQS-EIEKNPTLSPELTPFFDRTLIQDPSGLDMIFLNNWLE 60
           L GKS  MF+   AYLC ++ E E+ PTL  EL P FDR +++D   L   F NNW E
Sbjct: 172 LDGKSSIMFIKAWAYLCNKTIETEEPPTLLRELQPLFDRNIVKDLDELGDKFTNNWRE 229


>IMGA|Medtr3g030230.1 Transferase chr03_pseudomolecule_IMGAG_V3
           8137604-8139203 E EGN_Mt090430 20090702
          Length = 468

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 37  PFFDRTLIQDPSGLDMIFLNNWLESRLLCVNDKPRSLKLWQVPRDLSSLVRSTFELCHED 96
           P +DR++I D + L  +FL +W + RL+      R  K+     D S++ R+TF +    
Sbjct: 205 PLYDRSVIIDTNDLHEVFLKDWRKRRLVLNAKDSRESKV-----DSSNMTRATFLMSLTQ 259

Query: 97  IKKLRRKVLSQLEDQNKIKSMNLSTFVL*FAYTLVCIVKAR 137
           ++K+++ ++   +++   + ++LS++VL  A+  +C++K +
Sbjct: 260 MEKIKKIIVESCKEKKTSQPLHLSSYVLTSAFLWICLLKTQ 300