Jatropha Genome Database

JcPR04F24VT.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR04F24VT.10 + phase: 0 /partial
         (80 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g083630.1 DNA primase, small subunit chr03_pseudomole...   107   2e-24

>IMGA|Medtr3g083630.1 DNA primase, small subunit
          chr03_pseudomolecule_IMGAG_V3 19698279-19704967 E
          EGN_Mt090430 20090702
          Length = 433

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 52/59 (88%)

Query: 7  DGKHPACDKSYFGRREFSFTLDNDIYLRFQSFNNESELENSIKEKCPFKIDIGPVYSVD 65
          DGKHP CD+SYFGRREFSFTL+ D YLRFQS+NN  ELE +IKEKCP KIDIGPVY+VD
Sbjct: 36 DGKHPGCDQSYFGRREFSFTLNGDFYLRFQSYNNALELEKAIKEKCPLKIDIGPVYTVD 94