Jatropha Genome Database

JcPR03AIW3S.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AIW3S.10 - phase: 1 /partial
         (90 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g097390.1 Arginine decarboxylase chr04_pseudomolecule...    95   1e-20
IMGA|Medtr4g097440.1 Arginine decarboxylase chr04_pseudomolecule...    94   1e-20

>IMGA|Medtr4g097390.1 Arginine decarboxylase
           chr04_pseudomolecule_IMGAG_V3 20836174-20833237 E
           EGN_Mt090430 20090702
          Length = 730

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 2   IVSHHSILIFEXXXXXXXXXXXXXXXXGFQYFVDGLTEDAISDYRNLTSAAMRGENDTCL 61
           IVSHHS+LIFE                G QY  +GL+E+A++DY+N+++A + G+++ CL
Sbjct: 403 IVSHHSVLIFEAIGASSKSAPSLSSI-GLQYLGEGLSEEALADYQNISAATLHGDHEACL 461

Query: 62  LYADQLKQRCVDQFKEGSIGMEQLAAVD 89
           LY DQ K+ CV+QFK+G++G+EQLAAVD
Sbjct: 462 LYTDQFKKHCVEQFKQGTLGIEQLAAVD 489


>IMGA|Medtr4g097440.1 Arginine decarboxylase
           chr04_pseudomolecule_IMGAG_V3 20852132-20853853 E
           EGN_Mt090430 20090702
          Length = 432

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 2   IVSHHSILIFEXXXXXXXXXXXXXXXXGFQYFVDGLTEDAISDYRNLTSAAMRGENDTCL 61
           IVSHHS+LIFE                G QY  +GL+E+A++DY+N+++A + G+++ CL
Sbjct: 105 IVSHHSVLIFEAIGASSKSAPSLSSI-GLQYLGEGLSEEALADYQNISAATLHGDHEACL 163

Query: 62  LYADQLKQRCVDQFKEGSIGMEQLAAVDS 90
           LY DQ K+ CV+QFK+G++G+EQLAAVD 
Sbjct: 164 LYTDQFKKHCVEQFKQGTLGIEQLAAVDG 192