Jatropha Genome Database

JcPR02IGLIS.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02IGLIS.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g013450.1 Peptidyl-prolyl cis-trans isomerase, cyclop...    59   1e-09
IMGA|Medtr3g136570.1 Peptidyl-prolyl cis-trans isomerase, cyclop...    57   3e-09

>IMGA|Medtr1g013450.1 Peptidyl-prolyl cis-trans isomerase,
           cyclophilin type chr01_pseudomolecule_IMGAG_V3
           2473357-2480125 E EGN_Mt090430 20090702
          Length = 832

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 84  GRELSRSRSPNGTPQRVRKGRGFTERYSFARRYRTPS 120
           GR LS+S SP+ +P+R+R+GRGF+ERYS+ARRYRTPS
Sbjct: 662 GRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPS 698


>IMGA|Medtr3g136570.1 Peptidyl-prolyl cis-trans isomerase,
           cyclophilin type chr03_pseudomolecule_IMGAG_V3
           34507377-34514948 E EGN_Mt090430 20090702
          Length = 906

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 84  GRELSRSRSPNGTPQRVRKGRGFTERYSFARRYRTPS 120
           G  LSRS SP+ +P+R+R+GRGF+ERYS+ARRYRTPS
Sbjct: 724 GGSLSRSASPDASPKRIRRGRGFSERYSYARRYRTPS 760