Jatropha Genome Database

JcPR02GZLT5.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02GZLT5.10 + phase: 0 /pseudo/partial
         (74 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g025370.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    88   1e-18
IMGA|Medtr1g125200.1 Tubby; Cyclin-like F-box chr01_pseudomolecu...    59   6e-10
IMGA|Medtr5g020460.1 Tubby; Cyclin-like F-box chr05_pseudomolecu...    57   2e-09
IMGA|Medtr2g008070.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    55   1e-08
IMGA|Medtr2g091950.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    54   2e-08

>IMGA|Medtr2g025370.1 Tubby; Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 6717605-6712248 E
           EGN_Mt090430 20090702
          Length = 404

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 43/45 (95%)

Query: 30  KFLKSRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           KF KSRSTR+VN+KQVSP+VP GNYPVAH+SYELNVLGSRGPRRM
Sbjct: 196 KFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRM 240


>IMGA|Medtr1g125200.1 Tubby; Cyclin-like F-box
           chr01_pseudomolecule_IMGAG_V3 27545376-27541451 F
           EGN_Mt090430 20090702
          Length = 431

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query: 37  TRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           +R  N K+VSP+VP+G+Y +A V+YELNVLG+RGPRRM
Sbjct: 218 SRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRM 255


>IMGA|Medtr5g020460.1 Tubby; Cyclin-like F-box
           chr05_pseudomolecule_IMGAG_V3 7743266-7739685 F
           EGN_Mt090430 20090702
          Length = 416

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 34  SRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           SRS+R  + +QVSPRVPA NY V+ V+YELNVL +RGPRRM
Sbjct: 216 SRSSRRFHPRQVSPRVPACNYIVSTVAYELNVLRTRGPRRM 256


>IMGA|Medtr2g008070.1 Tubby; Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 1383118-1379338 F
           EGN_Mt090430 20090702
          Length = 427

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 30/32 (93%)

Query: 43  KQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           K+VSP+VP+G+Y +A V+YELNVLG+RGPR+M
Sbjct: 227 KKVSPKVPSGSYNIAQVTYELNVLGTRGPRKM 258


>IMGA|Medtr2g091950.1 Tubby; Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 20897048-20901698 F
           EGN_Mt090430 20090702
          Length = 371

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 34  SRSTRIVNMKQVSPRVPAGNYPVAHVSYELNVLGSRGPRRM 74
           +R++R    KQ+SP+VPAGN+    VSY+ N+L SRGPRRM
Sbjct: 203 ARASRRFASKQISPQVPAGNFEAGDVSYKFNLLKSRGPRRM 243