Jatropha Genome Database

JcPR02GC7KU.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02GC7KU.10 + phase: 1 /pseudo/partial
         (55 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g104680.1 YABBY protein chr02_pseudomolecule_IMGAG_V3...    67   2e-12
IMGA|Medtr8g120670.1 High mobility group box chr08_pseudomolecul...    65   1e-11
IMGA|Medtr8g120820.1 High mobility group box chr08_pseudomolecul...    65   1e-11
IMGA|Medtr4g066920.1 High mobility group box chr04_pseudomolecul...    61   1e-10
IMGA|Medtr5g035320.1 YABBY protein chr05_pseudomolecule_IMGAG_V3...    59   5e-10
IMGA|Medtr8g106280.1 High mobility group box chr08_pseudomolecul...    59   6e-10
IMGA|Medtr5g048750.1 YABBY protein chr05_pseudomolecule_IMGAG_V3...    54   3e-08

>IMGA|Medtr2g104680.1 YABBY protein chr02_pseudomolecule_IMGAG_V3
           24749728-24755861 E EGN_Mt090430 20090702
          Length = 195

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIKEE  +RIKASNPDISHREAF  ++K      HI
Sbjct: 119 PEKRQRVPSAYNRFIKEE-IQRIKASNPDISHREAFSTAAKNWAHFPHI 166


>IMGA|Medtr8g120670.1 High mobility group box
           chr08_pseudomolecule_IMGAG_V3 27650416-27646589 E
           EGN_Mt090430 20090702
          Length = 191

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYN+FIKEE  +RIKA+NPDISHREAF  ++K      HI
Sbjct: 113 PEKRQRVPSAYNQFIKEE-IQRIKANNPDISHREAFSTAAKNWAHFPHI 160


>IMGA|Medtr8g120820.1 High mobility group box
           chr08_pseudomolecule_IMGAG_V3 27770377-27766553 E
           EGN_Mt090430 20090702
          Length = 191

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYN+FIKEE  +RIKA+NPDISHREAF  ++K      HI
Sbjct: 113 PEKRQRVPSAYNQFIKEE-IQRIKANNPDISHREAFSTAAKNWAHFPHI 160


>IMGA|Medtr4g066920.1 High mobility group box
           chr04_pseudomolecule_IMGAG_V3 12816437-12824316 E
           EGN_Mt090430 20090702
          Length = 177

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 2   EKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           EKR RVPSAYNRFIKEE  +RIKASNPDISHREAF  ++K      HI
Sbjct: 108 EKRHRVPSAYNRFIKEE-IQRIKASNPDISHREAFSSAAKNWAHFPHI 154


>IMGA|Medtr5g035320.1 YABBY protein chr05_pseudomolecule_IMGAG_V3
           14582430-14584309 H EGN_Mt090430 20090702
          Length = 217

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEKRQR PSAYNRFIKEE  KR+KA NPD++H+EAF  ++K
Sbjct: 117 PEKRQRTPSAYNRFIKEE-IKRLKAKNPDMAHKEAFSTAAK 156


>IMGA|Medtr8g106280.1 High mobility group box
           chr08_pseudomolecule_IMGAG_V3 23759681-23756536 E
           EGN_Mt090430 20090702
          Length = 219

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 2   EKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           EKRQRVPSAYNRFIK+E  +RIK+ NPDI+HREAF  ++K      HI
Sbjct: 131 EKRQRVPSAYNRFIKDE-IQRIKSVNPDITHREAFSAAAKNWAHFPHI 177


>IMGA|Medtr5g048750.1 YABBY protein chr05_pseudomolecule_IMGAG_V3
           20641711-20644738 H EGN_Mt090430 20090702
          Length = 172

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEK+ R+PSAYNRF+KEE  +RIK +NP I HREAF  ++K
Sbjct: 111 PEKKHRLPSAYNRFMKEE-IQRIKVANPQIPHREAFSAAAK 150