Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139939.10 - phase: 0 /partial
         (56 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233577_39.1 Fatty acid desaturase AC233577.5 182710-18086...    89   6e-19
IMGA|Medtr7g111900.1 Fatty acid desaturase chr07_pseudomolecule_...    83   4e-17
IMGA|Medtr4g013060.1 Fatty acid desaturase chr04_pseudomolecule_...    47   3e-06
IMGA|Medtr5g079460.1 Fatty acid desaturase chr05_pseudomolecule_...    46   6e-06

>IMGA|AC233577_39.1 Fatty acid desaturase AC233577.5 182710-180865 E
           EGN_Mt090430 20090702
          Length = 343

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAFT 50
           VAHH+FSTMPHYHAMEAT A+KPILGEYYQFD TPF+KA+WRE K+  + 
Sbjct: 276 VAHHIFSTMPHYHAMEATKAMKPILGEYYQFDDTPFYKALWREAKECLYV 325


>IMGA|Medtr7g111900.1 Fatty acid desaturase
           chr07_pseudomolecule_IMGAG_V3 26389378-26394723 E
           EGN_Mt090430 20090702
          Length = 392

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAF 49
           VAHHLFSTMPHYHAMEAT AIKPILG+YY+ D TPF++A+WRE ++  +
Sbjct: 325 VAHHLFSTMPHYHAMEATKAIKPILGDYYRLDETPFYQALWREARECIY 373


>IMGA|Medtr4g013060.1 Fatty acid desaturase
           chr04_pseudomolecule_IMGAG_V3 2464310-2468599 E
           EGN_Mt090430 20090702
          Length = 440

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG YY+
Sbjct: 363 VIHHLFPQIPHYHLIEATEAAKPVLGRYYK 392


>IMGA|Medtr5g079460.1 Fatty acid desaturase
           chr05_pseudomolecule_IMGAG_V3 29627982-29625700 E
           EGN_Mt090430 20090702
          Length = 391

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KPI G+YY+
Sbjct: 315 VVHHLFPQIPHYHLVEATKAAKPIFGDYYR 344