Jatropha Genome Database

JcCD0139598.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139598.10 + phase: 1 /partial
         (83 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g089700.1 Isopentenyl-diphosphate delta-isomerase, ty...   164   1e-41

>IMGA|Medtr7g089700.1 Isopentenyl-diphosphate delta-isomerase, type
           1 chr07_pseudomolecule_IMGAG_V3 19815896-19811870 E
           EGN_Mt090430 20090702
          Length = 287

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/83 (90%), Positives = 83/83 (100%)

Query: 1   DYLLFIVRDVNVNPNPNEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 60
           DYLLFIVRDVNVNPNP+EVADIKYVNRDQLKELLRK+DAGEEGLKLSPWFRL+VDNFLFK
Sbjct: 205 DYLLFIVRDVNVNPNPDEVADIKYVNRDQLKELLRKSDAGEEGLKLSPWFRLIVDNFLFK 264

Query: 61  WWEHVEQGTLKDVVDMQTIHKLT 83
           WW+H+EQGTLK+V+DM+TIHKLT
Sbjct: 265 WWDHLEQGTLKEVIDMKTIHKLT 287