Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (112 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g014830.1 Stem-specific protein TSJT1, related chr02_...    90   3e-19
IMGA|AC233659_18.1 Stem-specific protein TSJT1, related AC233659...    84   1e-17
IMGA|Medtr2g014830.2 Stem-specific protein TSJT1, related chr02_...    72   7e-14
IMGA|AC233674_1.1 Stem-specific protein TSJT1, related AC233674....    62   5e-11

>IMGA|Medtr2g014830.1 Stem-specific protein TSJT1, related
           chr02_pseudomolecule_IMGAG_V3 3912703-3914594 F
           EGN_Mt090430 20090702
          Length = 251

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 63/95 (66%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   EG+F  + +   K    FAA G++  + +YWGIA DGS
Sbjct: 108 IEAYRTLRDRGPYPADQVLKGLEGSFAFVIY-DHKDGTVFAASGSDGHIGLYWGIAADGS 166

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVIS+NLE +K SCAKSFAPFP GC+FHSE GL++
Sbjct: 167 VVISENLELVKASCAKSFAPFPTGCLFHSEHGLLN 201


>IMGA|AC233659_18.1 Stem-specific protein TSJT1, related AC233659.1
           80671-78758 E EGN_Mt090430 20090702
          Length = 255

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   +G+F  + +   K    F A      ++++WGIA DGS
Sbjct: 109 IEAYRTLRDRGPFPADQVLKELDGSFGFIIYDD-KDGTVFVASDRNGQIDLFWGIAADGS 167

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVIS+NLE IK SC+KSFAPFP GCMFHSE GL S
Sbjct: 168 VVISENLELIKASCSKSFAPFPTGCMFHSEHGLTS 202


>IMGA|Medtr2g014830.2 Stem-specific protein TSJT1, related
           chr02_pseudomolecule_IMGAG_V3 3912703-3914090 F
           EGN_Mt090430 20090702
          Length = 191

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 4/84 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   EG+F  + +   K    FAA G++  + +YWGIA DGS
Sbjct: 108 IEAYRTLRDRGPYPADQVLKGLEGSFAFVIY-DHKDGTVFAASGSDGHIGLYWGIAADGS 166

Query: 78  VVISDNLEGIKGSCAKSFAPFPKG 101
           VVIS+NLE +K SCAKSFAPFP G
Sbjct: 167 VVISENLELVKASCAKSFAPFPTG 190


>IMGA|AC233674_1.1 Stem-specific protein TSJT1, related AC233674.1
           2329-1 E EGN_Mt090430 20090702
          Length = 229

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  +S+++   +G F  + F +   + +F +  A+  V  +WG   DG+
Sbjct: 106 IEAYRTLRDRGPYPASQVVRDFQGKFAFILFDSGSKN-AFISADADGNVPFFWGTDADGN 164

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           +V+SD  + +  SC KS+APFPKGC F +  GL S
Sbjct: 165 LVLSDETDIVTKSCGKSYAPFPKGCFFTTSGGLSS 199