Jatropha Genome Database

JcCD0108263.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0108263.10 - phase: 2 /pseudo/partial
         (108 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g009740.2 Dynamin central region; Dynamin; Dynamin GT...   103   2e-23
IMGA|Medtr2g009740.1 Dynamin central region; Dynamin; Dynamin GT...   103   2e-23
IMGA|Medtr4g121300.2 Dynamin central region; Dynamin GTPase effe...    88   1e-18
IMGA|Medtr4g121300.1 Dynamin central region; Dynamin; Dynamin GT...    87   2e-18
IMGA|Medtr4g121440.1 Dynamin central region; Dynamin; Dynamin GT...    87   2e-18

>IMGA|Medtr2g009740.2 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr02_pseudomolecule_IMGAG_V3
           2202134-2213835 E EGN_Mt090430 20090702
          Length = 497

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 60/72 (83%), Gaps = 2/72 (2%)

Query: 5   LQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSL-RQKDGAEPDKAPASERTLKSRA 63
           ++MDYINTSHPNFIGGSKA+EIA+QQ KSSRA  LSL R KD  E +K  ASERT+KSRA
Sbjct: 172 MEMDYINTSHPNFIGGSKALEIAVQQTKSSRAA-LSLSRPKDALESEKGSASERTVKSRA 230

Query: 64  ILARQVNGVVAD 75
           ILARQ NGVV D
Sbjct: 231 ILARQANGVVVD 242


>IMGA|Medtr2g009740.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr02_pseudomolecule_IMGAG_V3
           2202134-2213835 E EGN_Mt090430 20090702
          Length = 835

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 60/72 (83%), Gaps = 2/72 (2%)

Query: 5   LQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSL-RQKDGAEPDKAPASERTLKSRA 63
           ++MDYINTSHPNFIGGSKA+EIA+QQ KSSRA  LSL R KD  E +K  ASERT+KSRA
Sbjct: 510 MEMDYINTSHPNFIGGSKALEIAVQQTKSSRAA-LSLSRPKDALESEKGSASERTVKSRA 568

Query: 64  ILARQVNGVVAD 75
           ILARQ NGVV D
Sbjct: 569 ILARQANGVVVD 580


>IMGA|Medtr4g121300.2 Dynamin central region; Dynamin GTPase
           effector chr04_pseudomolecule_IMGAG_V3 28404631-28411225
           E EGN_Mt090430 20090702
          Length = 316

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 53/73 (72%), Gaps = 4/73 (5%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++MDYINTSHPNFIGGSKA+E A+QQ KSS    +    KD  E DK  ASER+ KSR
Sbjct: 45  IEMEMDYINTSHPNFIGGSKALEAAVQQTKSSTVSKV----KDAVESDKGSASERSGKSR 100

Query: 63  AILARQVNGVVAD 75
           +ILAR  NG +AD
Sbjct: 101 SILARHANGGMAD 113


>IMGA|Medtr4g121300.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr04_pseudomolecule_IMGAG_V3
           28401923-28411225 E EGN_Mt090430 20090702
          Length = 761

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 53/73 (72%), Gaps = 4/73 (5%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++MDYINTSHPNFIGGSKA+E A+QQ KSS    +    KD  E DK  ASER+ KSR
Sbjct: 490 IEMEMDYINTSHPNFIGGSKALEAAVQQTKSSTVSKV----KDAVESDKGSASERSGKSR 545

Query: 63  AILARQVNGVVAD 75
           +ILAR  NG +AD
Sbjct: 546 SILARHANGGMAD 558


>IMGA|Medtr4g121440.1 Dynamin central region; Dynamin; Dynamin
           GTPase effector chr04_pseudomolecule_IMGAG_V3
           28476356-28485660 E EGN_Mt090430 20090702
          Length = 766

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 52/73 (71%), Gaps = 6/73 (8%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++MDYINTSHPNFIGGSKA+E A+QQ KSS         KD  E DK  ASER+ KSR
Sbjct: 490 IEMEMDYINTSHPNFIGGSKALEAAVQQTKSSTV------SKDAVESDKGSASERSGKSR 543

Query: 63  AILARQVNGVVAD 75
           +ILAR  NG +AD
Sbjct: 544 SILARHANGGMAD 556