Jatropha Genome Database

JcCD0099951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0099951.10 - phase: 0 /partial/short
         (49 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g037340.1 IQ calmodulin-binding region; HECT chr02_ps...    49   5e-07
IMGA|Medtr2g037340.2 HECT chr02_pseudomolecule_IMGAG_V3 10110766...    48   1e-06

>IMGA|Medtr2g037340.1 IQ calmodulin-binding region; HECT
           chr02_pseudomolecule_IMGAG_V3 10124038-10100639 E
           EGN_Mt090430 20090702
          Length = 1024

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           +FV+E G+ EAG+D GG+ K+F+ +I++A+F  +YGLF +
Sbjct: 694 TFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKE 733


>IMGA|Medtr2g037340.2 HECT chr02_pseudomolecule_IMGAG_V3
          10110766-10106951 E EGN_Mt090430 20090702
          Length = 66

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 10 SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
          +FV+E G+ EAG+D GG+ K+F+ +I++A+F  +YGLF +
Sbjct: 16 TFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKR 55