Jatropha Genome Database

JcCD0071482.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0071482.10 - phase: 1 /pseudo/partial
         (75 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g110780.1 Galactose oxidase, central chr01_pseudomole...    96   6e-21
IMGA|Medtr1g111130.1 Galactose oxidase, central chr01_pseudomole...    96   6e-21
IMGA|Medtr2g104850.1 DNA topoisomerase II; Serine/threonine-spec...    69   6e-13
IMGA|Medtr4g067100.1 Serine/threonine-specific protein phosphata...    57   2e-09

>IMGA|Medtr1g110780.1 Galactose oxidase, central
           chr01_pseudomolecule_IMGAG_V3 23426878-23424656 E
           EGN_Mt090430 20090702
          Length = 204

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 75
           VGTMVVFQGGIGPAGHSTDDLYVLDLTNDK+KWHRVVVQGQGPGP
Sbjct: 107 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGP 151


>IMGA|Medtr1g111130.1 Galactose oxidase, central
           chr01_pseudomolecule_IMGAG_V3 23577588-23576311 E
           EGN_Mt090430 20090702
          Length = 174

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 75
           VGTMVVFQGGIGPAGHSTDDLYVLDLTNDK+KWHRVVVQGQGPGP
Sbjct: 107 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGP 151


>IMGA|Medtr2g104850.1 DNA topoisomerase II;
           Serine/threonine-specific protein phosphatase and
           bis(5-nucleosyl)-tetraphosphatase
           chr02_pseudomolecule_IMGAG_V3 24835580-24845823 E
           EGN_Mt090430 20090702
          Length = 995

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 35/44 (79%)

Query: 31  VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 74
           VGTMVV QGGIGPAG S +DL+VLDLT    +WHRV VQG GPG
Sbjct: 175 VGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPG 218


>IMGA|Medtr4g067100.1 Serine/threonine-specific protein
          phosphatase and bis(5-nucleosyl)-tetraphosphatase
          chr04_pseudomolecule_IMGAG_V3 12922861-12934391 E
          EGN_Mt090430 20090702
          Length = 873

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query: 31 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR 65
          VGTMVV QGGIGPAG S +DL+VLDLT  + +WHR
Sbjct: 53 VGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHR 87