Jatropha Genome Database

JcCD0068965.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0068965.10 - phase: 1 /partial
         (124 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g110140.1 Transcriptional factor B3; Auxin response f...   108   5e-25
IMGA|Medtr2g005100.1 AUX/IAA protein; Transcriptional factor B3;...    47   2e-06
IMGA|Medtr4g019570.1 AUX/IAA protein; Transcriptional factor B3;...    45   9e-06

>IMGA|Medtr2g110140.1 Transcriptional factor B3; Auxin response
           factor; Aux/IAA_ARF_dimerisation
           chr02_pseudomolecule_IMGAG_V3 25776282-25779770 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 12/109 (11%)

Query: 4   FSDGSGSAFHQQGLLERSSCEG----FQWYKDNRQENEMSLETGICKVFMESEDVGRTLD 59
           FSD + S+  +Q    +SS       F W        ++ L+TG CKVF+ESEDVGRTLD
Sbjct: 553 FSDTTQSSISEQFSPAKSSTTSASADFCW--------QLGLDTGHCKVFLESEDVGRTLD 604

Query: 60  LSLLRSYEELYRKLADMFGIENSETLNNVLYRDITGSVKHIGDEPFSDF 108
           LS + SYEELYRKLA MFGIE SE L+ VLYRD TG+VK  G+EPF  F
Sbjct: 605 LSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATGAVKQTGEEPFRYF 653


>IMGA|Medtr2g005100.1 AUX/IAA protein; Transcriptional factor B3;
           Auxin response factor chr02_pseudomolecule_IMGAG_V3
           92528-103456 E EGN_Mt090430 20090702
          Length = 670

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 22  SCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIE- 80
           SC+  +    + QE++        KV M+   VGR +DL+    YE+L RKL +MF IE 
Sbjct: 526 SCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEG 585

Query: 81  ---NSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
               +     V+Y D    +  +GD+P+ +F    R++ I
Sbjct: 586 ELCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFI 625


>IMGA|Medtr4g019570.1 AUX/IAA protein; Transcriptional factor B3;
           Auxin response factor chr04_pseudomolecule_IMGAG_V3
           4019217-4014242 E EGN_Mt090430 20090702
          Length = 666

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 46  KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLYRDITGSVKHIGD 102
           KV M+   VGR +DL+ L  Y++L  +L ++F I+      N   +++ D  G +  +GD
Sbjct: 558 KVQMQGVAVGRAVDLATLNGYDQLIGELEELFDIKGQLQHRNTWEIVFTDDEGDMMLVGD 617

Query: 103 EPFSDFMKTARRLTI 117
           +P+ +F    RR+ I
Sbjct: 618 DPWPEFCNMVRRIFI 632