Jatropha Genome Database

JcCD0062083.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062083.10 + phase: 0 
         (73 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g084340.1 hypothetical protein chr07_pseudomolecule_I...    79   6e-16

>IMGA|Medtr7g084340.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 18191391-18195550 E
          EGN_Mt090430 20090702
          Length = 90

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 10 GDFRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELEVFP 59
          GDFR KVWSM+GGP+CRPKHW+RNTAIAM  + L+CIPI   SA+LE  P
Sbjct: 16 GDFRYKVWSMTGGPHCRPKHWKRNTAIAMFGIVLVCIPIFKLSAKLEQRP 65