Jatropha Genome Database

JcCD0055831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055831.10 + phase: 0 /partial
         (87 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g012740.1 Chlorophyll A-B binding protein chr06_pseud...   125   4e-30
IMGA|Medtr6g041050.1 Chlorophyll A-B binding protein chr06_pseud...   104   1e-23
IMGA|Medtr5g104980.1 Chlorophyll A-B binding protein chr05_pseud...    86   4e-18
IMGA|Medtr2g095410.1 Chlorophyll A-B binding protein chr02_pseud...    83   3e-17
IMGA|CU179634_22.1 Chlorophyll A-B binding protein CU179634.6 82...    59   8e-10
IMGA|Medtr6g070180.1 Chlorophyll A-B binding protein chr06_pseud...    45   7e-06
IMGA|Medtr6g070180.2 Chlorophyll A-B binding protein chr06_pseud...    45   7e-06
IMGA|Medtr6g070180.3 Chlorophyll A-B binding protein chr06_pseud...    45   1e-05

>IMGA|Medtr6g012740.1 Chlorophyll A-B binding protein
          chr06_pseudomolecule_IMGAG_V3 2389037-2387803 E
          EGN_Mt090430 20090702
          Length = 265

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASKNVS-SGSPWYGPDRVKYLG 59
          MA STMALSS S+ GKA+KL PS P+L+  GR+TMRKT +K  + SGS WYGPDRVKYLG
Sbjct: 1  MAASTMALSSSSMVGKAIKLSPSTPDLV-MGRITMRKTTTKKTAPSGSQWYGPDRVKYLG 59

Query: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          PFSGE PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 60 PFSGEAPSYLTGEFPGDYGWDTAGLSAD 87


>IMGA|Medtr6g041050.1 Chlorophyll A-B binding protein
          chr06_pseudomolecule_IMGAG_V3 8723376-8722408 E
          EGN_Mt090430 20090702
          Length = 228

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 64/87 (73%), Gaps = 15/87 (17%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGP 60
          MA STM+LSS SL GKA+KL PS  +L               VSSGSPWYGPDRVKYLGP
Sbjct: 1  MAASTMSLSSSSLVGKAIKLNPSTQDL---------------VSSGSPWYGPDRVKYLGP 45

Query: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          F GE PSYLTGEFPGDYGW+TAGLSAD
Sbjct: 46 FFGEAPSYLTGEFPGDYGWNTAGLSAD 72


>IMGA|Medtr5g104980.1 Chlorophyll A-B binding protein
          chr05_pseudomolecule_IMGAG_V3 42142704-42144289 E
          EGN_Mt090430 20090702
          Length = 265

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 45/60 (75%), Gaps = 2/60 (3%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
           G  R TMR+T     +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 30 FGQSRFTMRRTVKS--APESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSAD 87


>IMGA|Medtr2g095410.1 Chlorophyll A-B binding protein
          chr02_pseudomolecule_IMGAG_V3 21788149-21786667 F
          EGN_Mt090430 20090702
          Length = 264

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 42/60 (70%), Gaps = 9/60 (15%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MG  R TM             WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 34 MGTSRFTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSAD 84


>IMGA|CU179634_22.1 Chlorophyll A-B binding protein CU179634.6
           82649-85163 E EGN_Mt090430 20090702
          Length = 222

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 47  SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
           S WYG DR ++LGP S + P+YL GE PGDYG+D  GLS D
Sbjct: 94  SIWYGEDRPRWLGPISYDYPAYLNGELPGDYGFDICGLSKD 134


>IMGA|Medtr6g070180.1 Chlorophyll A-B binding protein
           chr06_pseudomolecule_IMGAG_V3 13158930-13155401 E
           EGN_Mt090430 20090702
          Length = 289

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 36  RKTASKNVSSGSPWYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLS 85
           +K A+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  GLS
Sbjct: 58  QKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLS 110


>IMGA|Medtr6g070180.2 Chlorophyll A-B binding protein
           chr06_pseudomolecule_IMGAG_V3 13158930-13155401 E
           EGN_Mt090430 20090702
          Length = 279

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 36  RKTASKNVSSGSPWYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLS 85
           +K A+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  GLS
Sbjct: 58  QKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLS 110


>IMGA|Medtr6g070180.3 Chlorophyll A-B binding protein
           chr06_pseudomolecule_IMGAG_V3 13158930-13157591 E
           EGN_Mt090430 20090702
          Length = 120

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 36  RKTASKNVSSGSPWYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLS 85
           +K A+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  GLS
Sbjct: 58  QKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLS 110